Inferences from tip-calibrated phylogenies: A review and a practical guide

by Rieux, Adrien, Balloux, François

Inferences from tip-calibrated phylogenies: conceptual bases, applications and prospects in plant-pathogenic bacteria

by Rieux, Adrien, Eldholm, Vegard, Spagnoletti, Matteo, Balloux, François

Time-calibrated genomic evolution of a monomorphic bacterium during its establishment as an endemic crop pathogen

by Richard, Damien, Pruvost, Olivier, Balloux, François, Boyer, Claudine, Rieux, Adrien, Lefeuvre, Pierre

Salmonella enterica from a soldier from the 1652 siege of Barcelona (Spain) supports historical transatlantic epidemic contacts

by Dios Martínez, Antonio de, Carrión, Pablo, Olalde, Iñigo, Llovera Nada, Laia, Lizano, Esther, Pàmies, Dídac, Marqués-Bonet, Tomàs, Balloux, François, Dorp, Lucy van, Lalueza-Fox, Carles
Published 2021-09-24

Metagenomic analysis of a blood stain from the French revolutionary Jean-Paul Marat (1743–1793)

by De-Dios, Toni, van Dorp, Lucy, Charlier, Philippe, Morfopoulou, Sofia, Lizano, Esther, Bon, Celine, Le Bitouzé, Corinne, Alvarez-Estape, Marina, Marqués-Bonet, Tomàs, Balloux, François, Lalueza-Fox, Carles
Published 2020-06

Genetic affinities of an eradicated european plasmodium falciparum strain

by De-Dios, Toni, van Dorp, Lucy, Gelabert, Pere, Carøe, Christian, Sandoval-Velasco, Marcela, Fregel, Rosa, Escosa, Raül, Aranda, Carles, Huijben, Silvia, Balloux, François, Gilbert, M. Thomas P., Lalueza-Fox, Carles
Published 2019-09-01

The global distribution and spread of the mobilized colistin resistance gene mcr-1

by Wang, Ruobing, van Dorp, Lucy, Shaw, Liam P., Bradley, Phelim, Wang, Qi, Wang, Xiaojuan, Jin, Longyang, Zhang, Qing, Liu, Yuqing, Rieux, Adrien, Dorai-Schneiders, Thamarai, Weinert, Lucy Anne, Iqbal, Zamin, Didelot, Xavier, Wang, Hui, Balloux, François

Genomic analysis of 18th-century kazakh individuals and their oral microbiome

by White, Anna E., Dios Martínez, Antonio de, Carrión, Pablo, Bonora, Gian Luca, Llovera, Laia, Cilli, Elisabetta, Lizano, Esther, Khabdulina, Maral K., Tieugabulov, Daniyar, Olalde, Iñigo, Marqués-Bonet, Tomàs, Balloux, François, Pettener, Davide, Dorp, Lucy van, Luiselli, Donata, Lalueza-Fox, Carles
Published 2021-12-14

Plasmodium vivax Malaria Viewed through the Lens of an Eradicated European Strain

by van Dorp, Lucy, Gelabert, Pere, Rieux, Adrien, Manuel, Marc de, De-Dios, Toni, Gopalakrishnan, Shyam, Carøe, Christian, Sandoval-Velasco, Marcela, Fregel, Rosa, Olalde, Iñigo, Escosa, Raül, Aranda, Carles, Huijben, Silvia, Mueller, Ivo, Marqués-Bonet, Tomàs, Balloux, François, Gilbert, M. Thomas P., Lalueza-Fox, Carles
Published 2020-03

Plasmodium vivax malaria viewed through the lens of an eradicated european strain

by van Dorp, Lucy, Gelabert, Pere, Rieux, Adrien, de Manuel, Marc, de-Dios, Toni, Gopalakrishnan, Shyam, Caroe, christian, Sandoval-Velasco, Marcela, Fregel, Rosa, Olalde, Iñigo, Escosa, Raül, Aranda, Carles, Huijben, Silvie, Mueller, Ivo, Marquès-Bonet, Tomàs, Balloux, François, Gilbert, M. Thomas P., Lalueza-Fox, Carles

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

by Morelli, Giovanna, Song, Yajun, Mazzoni, Camila J., Eppinger, Mark, Roumagnac, Philippe, Wagner, David.M., Feldkamp, Mirjam, Kusecek, Barica, Vogler, Amy. J., Li, Yanjun, Cui, Yujun, Thomson, Nicholas R, Jombart, Thibaut, Leblois, Raphaël, Lichtner, Peter, Rahalison, Lila, Petersen, Jeannine M, Balloux, François, Keim, Paul, Wirth, Thierry, Ravel, Jacques, Yang, Ruifu, Carniel, Elisabeth, Achtman, Mark

Recent Asian origin of chytrid fungi causing global amphibian declines

by O'Hanlon, Simon J., Rieux, Adrien, Farrer, Rhys A., Rosa, Gonçalo M., Waldman, Bruce, Bataille, Arnaud, Kosch, Tiffany A., Murray, Kris A., Brankovics, Balázs, Fumagalli, Matteo, Martin, Michael, Wales, Nathan, Alvarado-Rybak, Mario, Bates, Kieran A., Berger, Lee, Böll, Susanne, Brookes, Lola, Clare, Frances, Courtois, Elodie A., Cunningham, Andrew A., Doherty-Bone, Thomas M., Ghosh, Pria, Gower, David J., Hintz, William E., Höglund, Jacob, Jenkinson, Thomas S., Lin, Chun-Fu, Laurila, Anssi, Loyau, Thomas, Martel, An, Meurling, Sara, Miaud, Claude, Minting, Pete, Pasmans, Frank, Schmeller, Dirk S., Schmidt, Benedikt R., Shelton, Jennifer M. G., Skerratt, Lee F., Smith, Freya, Soto-Azat, Claudio, Spagnoletti, Matteo, Tessa, Giulia, Toledo, Luís Felipe, Valenzuela-Sánchez, Andrés, Verster, Ruhan, Vörös, Judit, Webb, Rebecca J., Wierzbicki, Claudia, Wombwell, Emma, Zamudio, Kelly R., Aanensen, David M., James, Timothy Y., Gilbert, M. Thomas P., Weldon, Ché, Bosch, Jaime, Balloux, François, Garner, Trenton W. J., Fisher, Matthew C.

The population genomic legacy of the second plague pandemic

by Gopalakrishnan, Shyam, Ebenesersdóttir, Sigríður Sunna, Lundstrøm, Inge K.C., Turner-Walker, Gordon, Moore, Kristjan H.S., Luisi, Pierre, Margaryan, Ashot, Martin, Michael D., Ellegaard, Martin Rene, Magnusson, Olafur þ., Sigurðsson, Ásgeir, Snorradóttir, Steinunn, Magnúsdóttir, Droplaug N., Laffoon, Jason, van Dorp, Lucy, Liu, Xiaodong, Moltke, Ida, Ávila-Arcos, María C., Schraiber, Joshua G., Rasmussen,Simon, Juan, David, Gelabert, Pere, De-Dios, Toni, Fotakis, Anna K., Iraeta-Orbegozo, Miren, Vågene, Åshild J., Dexter Denham, Sean, Christophersen, Axel, Stenøien, Hans K., Vieira, Filipe Garrett, Liu, Shanlin, Günther, Torsten, Kivisild, Toomas, Moseng, Ole Georg, Skar, Birgitte, Cheung, Christina, Sandoval-Velasco, Marcela, Wales, Nathan, Schroeder, Hannes, Campos, Paula F., Guðmundsdóttir, Valdís B., Sicheritz-Ponten, Thomas, Petersen, Bent, Halgunset, Jostein, Gilbert, Edmund, Cavalleri, Gianpiero L., Hovig, Eivind, Kockum, Ingrid, Olsson, Tomas, Alfredsson, Lars, Hansen, Thomas F., Werge, Thomas, Willerslev, Eske, Balloux, François, Marqués-Bonet, Tomàs, Lalueza-Fox, Carles, Nielsen, Rasmus, Stefánsson, Kári, Helgason, Agnar, Gilbert, M. Thomas P.
Published 2022-09-30