Modeling Population Growth in R with the biogrowth Package

The growth of populations is of interest in a broad variety of fields, such as epidemiology, economics or biology. Although a large variety of growth models are available in the scientific literature, their application usually requires advanced knowledge of mathematical programming and statistical inference, especially when modelling growth under dynamic environmental conditions. This article presents the biogrowth package for R, which implements functions for modelling the growth of populations. It can predict growth under static or dynamic environments, considering the effect of an arbitrary number of environmental factors. Moreover, it can be used to fit growth models to data gathered under static or dynamic environmental conditions. The package allows the user to fix any model parameter prior to the fit, an approach that can mitigate identifiability issues associated to growth models. The package includes common S3 methods for visualization and statistical analysis (summary of the fit, predictions,…), easing result interpretation. It also includes functions for model comparison/selection. We illustrate the functions in biogrowth using examples from food science and economy.

Bibliographic Details

Main Authors:	Garre, Alberto, Koomen, Jeroen, den Besten, Heidy M.W., Zwietering, Marcel H.
Format:	Article/Letter to editor biblioteca
Language:	English
Subjects:	R, dynamic modeling, kinetic modelling, model fitting, predictions, predictive microbiology, uncertainty,
Online Access:	https://research.wur.nl/en/publications/modeling-population-growth-in-r-with-the-biogrowth-package
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