Supplementary Dataset 1 from the paper "Syntenic cell wall QTLs as versatile breeding tools: intra-specific allelic variability and predictability of biomass quality loci in target plant species"
This dataset reports all the genetic polymorphisms (SNPs/INDELs) that were detected in all the genes included in the syntenic quantitative trait loci (SQTLs) for which intra-specific genomic diversity was studied by SQTLs alignment across genomes representing different plant accessions in the paper "Syntenic cell wall QTLs as versatile breeding tools: intra-specific allelic variability and predictability of biomass quality loci in target plant species" (currently under peer review; resource title and DOI will be added once the paper is published). The methodology followed for polymorphisms identification is detailly reported in the paper "Syntenic cell wall QTLs as versatile breeding tools: intra-specific allelic variability and predictability of biomass quality loci in target plant species". In brief, SQTL nucleotide sequences were aligned by NUCmer against diverse genomic assemblies from different accessions of six plant species (reported in the dataset). NUCmer outputs report SNPs and INDELs positions along SQTLs, whose data were used to infer changes in translated protein sequences in SQTL genes.
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| Format: | Dataset biblioteca |
| Published: |
Wageningen University & Research
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| Subjects: | Quantitative trait locus (QTL) analysys, Quantitative trait locus (loci) (QTL(s)), SQTL, angiosperm species, cell wall biology, genomic analysis, plant biology, synteny network, |
| Online Access: | https://research.wur.nl/en/datasets/supplementary-dataset-1-from-the-paper-syntenic-cell-wall-qtls-as |
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| Summary: | This dataset reports all the genetic polymorphisms (SNPs/INDELs) that were detected in all the genes included in the syntenic quantitative trait loci (SQTLs) for which intra-specific genomic diversity was studied by SQTLs alignment across genomes representing different plant accessions in the paper "Syntenic cell wall QTLs as versatile breeding tools: intra-specific allelic variability and predictability of biomass quality loci in target plant species" (currently under peer review; resource title and DOI will be added once the paper is published). The methodology followed for polymorphisms identification is detailly reported in the paper "Syntenic cell wall QTLs as versatile breeding tools: intra-specific allelic variability and predictability of biomass quality loci in target plant species". In brief, SQTL nucleotide sequences were aligned by NUCmer against diverse genomic assemblies from different accessions of six plant species (reported in the dataset). NUCmer outputs report SNPs and INDELs positions along SQTLs, whose data were used to infer changes in translated protein sequences in SQTL genes. |
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