Disentangling temporal associations in marine microbial networks
16 pages, 4 figures, 2 tables, supplementary information https://doi.org/10.1186/s40168-023-01523-z.-- Availability of data and materials: The BBMO microbial sequence abundances (ASV tables), taxonomic classifications, environmental data including nutrients, networks, and R-Markdowns for the data analysis including commands to run eLSA and EnDED (environmentally driven-edge-detection and computing Jaccard index) are publicly available: https://github.com/InaMariaDeutschmann/TemporalNetworkBBMO. DNA sequences are publicly available at the European Nucleotide Archive (https://www.ebi.ac.uk/ena; accession numbers PRJEB23788 for 18S rRNA genes & PRJEB38773 for 16S rRNA genes)
Main Authors: | , , , , , , , , , , |
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Other Authors: | |
Format: | artículo biblioteca |
Language: | English |
Published: |
BioMed Central
2023-04
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Subjects: | Association network, Temporal network, Time series, Microbial interactions, Microorganisms, Ocean, Plankton, Conserve and sustainably use the oceans, seas and marine resources for sustainable development, |
Online Access: | http://hdl.handle.net/10261/311214 |
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Summary: | 16 pages, 4 figures, 2 tables, supplementary information https://doi.org/10.1186/s40168-023-01523-z.-- Availability of data and materials: The BBMO microbial sequence abundances (ASV tables), taxonomic classifications, environmental data including nutrients, networks, and R-Markdowns for the data analysis including commands to run eLSA and EnDED (environmentally driven-edge-detection and computing Jaccard index) are publicly available: https://github.com/InaMariaDeutschmann/TemporalNetworkBBMO. DNA sequences are publicly available at the European Nucleotide Archive (https://www.ebi.ac.uk/ena; accession numbers PRJEB23788 for 18S rRNA genes & PRJEB38773 for 16S rRNA genes) |
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