Transposable elements contribute to the genomic response to insecticides in Drosophila melanogaster
File name: Supplementary Table S1. Title: Differentially gene expression results. Caption: Sequencing statistics for all the strains analyzed in this work, and expression values for all differentially expressed genes in each strain. Genes previously reported as oxidative stress responsive genes are also listed.-- File name: Supplementary Table S2. Title: Gene ontology enrichment analysis. Caption: Significant gene ontology clusters according to DAVID functional annotation tool for pairs of strains and for individual strains.-- File name: Supplementary Table S3. Title: Identification of hub genes in the four strains analyzed in this work Caption: Cytohubba results for individual strains, and list of the unique hubs genes found across strains including those located nearby a TE.-- File name: Supplementary Table S4. Title: Genotyping and genome distribution of TEs for each analyzed strain. Caption: Presence/absence of the reference TE insertions and distribution of these TEs regarding nearby genes in the strains analyzed in this work. The expression level of the genes nearby candidate TEs are also given.-- File name: Supplementary Table S5. Title: ATAC-seq analysis. Caption: Sequencing statistics and peak analysis for all the strains analyzed in this work.-- File name: Supplementary Table S6. Title: TE family expression analysis. Caption: Differentially expressed TE families and their distribution regarding nearby differentially expressed genes. The analysis of differentially expressed TE families in response to DDT is also given.
| Main Authors: | , , , , |
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| Other Authors: | |
| Format: | artículo biblioteca |
| Language: | English |
| Published: |
Royal Society (Great Britain)
2020-02-10
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| Subjects: | ATAC-seq, RNA-seq, Cap-n-collar (cnc), Adaptation, Transcription factor binding sites, |
| Online Access: | http://hdl.handle.net/10261/192868 http://dx.doi.org/10.13039/501100011033 http://dx.doi.org/10.13039/501100000780 http://dx.doi.org/10.13039/501100002809 http://dx.doi.org/10.13039/501100003329 |
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| Summary: | File name: Supplementary Table S1. Title: Differentially gene expression results. Caption: Sequencing statistics for all the strains analyzed in this work, and expression values for all differentially expressed genes in each strain. Genes previously reported as oxidative stress responsive genes are also listed.-- File name: Supplementary Table S2. Title: Gene ontology enrichment analysis. Caption: Significant gene ontology clusters according to DAVID functional annotation tool for pairs of strains and for individual strains.-- File name: Supplementary Table S3. Title: Identification of hub genes in the four strains analyzed in this work Caption: Cytohubba results for individual strains, and list of the unique hubs genes found across strains including those located nearby a TE.-- File name: Supplementary Table S4. Title: Genotyping and genome distribution of TEs for each analyzed strain. Caption: Presence/absence of the reference TE insertions and distribution of these TEs regarding nearby genes in the strains analyzed in this work. The expression level of the genes nearby candidate TEs are also given.-- File name: Supplementary Table S5. Title: ATAC-seq analysis. Caption: Sequencing statistics and peak analysis for all the strains analyzed in this work.-- File name: Supplementary Table S6. Title: TE family expression analysis. Caption: Differentially expressed TE families and their distribution regarding nearby differentially expressed genes. The analysis of differentially expressed TE families in response to DDT is also given. |
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