Building multiple sequence alignments with a flavor of HSSP alignments.

Building multiple sequence alignments with a flavor of HSSP alignments.

The present study describes the processing used for building SH2QS as well as a comparison of the degree of residue conservation reported by SH2QS and HSSP. The comparison of the profiles from two alignments is also presented.

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Bibliographic Details
Main Authors: HIGA, R. H., CRUZ, S. A. B. da, KUSER, P. R., YAMAGISHI, M. E. B., FILETO, R., OLIVEIRA, S. R. de M., MAZONI, I., SANTOS, E. H. dos, MANCINI, A. L., NESHICH, G.
Other Authors: ROBERTO HIROSHI HIGA, CNPTIA; SERGIO APARECIDO BRAGA DA CRUZ, CNPTIA; PAULA REGINA KUSER FALCAO, CNPTIA; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; RENATO FILETO; STANLEY ROBSON DE MEDEIROS OLIVEIRA, CNPTIA; IVAN MAZONI, CNPTIA; EDGARD HENRIQUE DOS SANTOS, CNPTIA; ADAUTO LUIZ MANCINI, CNPTIA; GORAN NESHICH, CNPTIA.
Format: Artigo de periódico biblioteca
Language:English
eng
Published: 2007-03-05
Subjects:Bioinformática, Estrutura secundária de proteínas, Sting, Multiple sequence alignment, Residue conservation, Relative entropy, Bioinformatics, Protein structure, Protein secondary structure,
Online Access:http://www.alice.cnptia.embrapa.br/alice/handle/doc/8262
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Description
Summary:The present study describes the processing used for building SH2QS as well as a comparison of the degree of residue conservation reported by SH2QS and HSSP. The comparison of the profiles from two alignments is also presented.

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