Blattella germanica Official Gene Set OGSv1.0

<p>The <em>Blattella germanica</em> genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The <em>Blattella germanica</em> research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0. The general procedure for generating this OGS is outlined here: <a href="https://github.com/NAL-i5K/GFF3toolkit/">https://github.com/NAL-i5K/GFF3toolkit/</a>. QC of community-curated models from the Apollo software was performed using the GFF3toolkit function gff3_QC.py, and errors were fixed using gff3_fix.py. OGSv1.0 was generated by merging the gene set BGER_v0.6.2 (provided by E. Jongepier, doi:10.1038/s41559-017-0459-1) with 1) QC'd and error-corrected community-curated models and 2) semi-automatically predicted miRNAs (references: doi:10.1038/srep37736 and doi.org/10.1186/s12864-017-4177-5) . Subsequently, i5k Workspace (<a href="https://i5k.nal.usda.gov/">https://i5k.nal.usda.gov/</a>) IDs were generated for all features. </p> <div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Blattella germanica Official Gene Set OGSv1.0.</p> <p>File Name: BGER_OGSv1-0.tar.gz</p><p>Resource Description: The attached tar.gz archive (BGER_OGSv1-0.tar.gz) contains the following files: * BGER_OGSv1-0_CDS.fa. CDS sequences of Blattella germanica genome annotations OGSv1.0. * BGER_OGSv1-0_pep.fa. Amino acid sequences of Blattella germanica genome annotations OGSv1.0. * BGER_OGSv1-0_trans.fa. Transcript sequences of Blattella germanica genome annotations OGSv1.0. * BGER_OGSv1-0.gff. Gff3 of all gene predictions of Blattella germanica genome annotations OGSv1.0 * BGER_OGSv1-0_idmap.txt. A mapping file describing ID and name updates from dataset Blattella germanica genome annotations v0.5.3. * readme. This file briefly describes how the dataset Blattella germanica Official Gene Set OGSv1.0 was generated. </p></li></ul>

Bibliographic Details

Main Authors:	Evelien Jongepier (13887065), Mark C. Harrison (12911681), Emily C. Jennings (15055309), Alexander Martynov (17478120), Maria Dolors Piulachs (17479065), Monica Poelchau (17477901), Andrew J. Rosendale (17477844), Jack Scanlan (17478639), Ayako Wada-Katsumata (14763686), Guillem Ylla (17479068), Hugh M. Robertson (17478090), Coby Schal (8929607), Xavier Belles (13209043), Stephen Richards (17476059), Erich G. Bornberg-Bauer (17479071)
Format:	Dataset biblioteca
Published:	2018
Subjects:	Genomics and transcriptomics, Gene expression (incl. microarray and other genome-wide approaches), Blattella germanica, German cockroach, genome annotation,
Online Access:	https://figshare.com/articles/dataset/Blattella_germanica_Official_Gene_Set_OGSv1_0/24661989
Tags:	Add Tag No Tags, Be the first to tag this record!