BBGD: an Online Database for Blueberry Genomic Data
<p>NOTE: This dataset is no longer publicly available.</p> <p>BBGD (<a href="http://bioinformatics.towson.edu/BBGD/">http://bioinformatics.towson.edu/BBGD/</a>) was developed as a database for blueberry genomics. BBGD is both a sequence and gene expression database. It stores both EST and microarray data and allows scientists to correlate expression profiles with gene function. BBGD is a public online database. "Presently, the main focus of the database is the identification of genes in blueberry that are significantly induced or suppressed after low temperature exposure. "</p> <p>To gain a better understanding of changes in gene expression associated with cold acclimation in blueberry, the Rowland laboratory (USDA-ARS, Beltsville, MD) has undertaken a genomics approach based on the analysis of Expressed Sequence Tags (ESTs). Initially, two standard cDNA libraries were constructed using RNA from cold-acclimated and non-acclimated floral buds of the blueberry cultivar ‘Bluecrop’ (<em>Vaccinium corymbosum</em> L.) and about 1200 5’-end ESTs were generated from each of the libraries. About 100 3’-end ESTs were generated from the cold-acclimated library as well.</p> <p>The Blueberry EST database contains EST sequences from a number blueberry libraries including cold acclimated and non-acclimated libraries. It also includes forward and reverse subtractive libraries.</p> <p>You can query the sequence database by clone ID, accession number or gene (clone) name below. Or you can get a list (in tabular) format of all the clones in a particular library by clicking on the library name on the left side navigation bar.</p> <p>Attribution for photo: <br><a href="http://www.ars.usda.gov/is/graphics/photos/sep12/d2601-1.htm">D2601-1 - Blueberry plant:</a> Copyright free, public domain photo by Mark Ehlenfeldt</p>
| Main Authors: | , |
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| Format: | Dataset biblioteca |
| Published: |
2015
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| Subjects: | Genomics and transcriptomics, Genetics, Gene expression (incl. microarray and other genome-wide approaches), BBGD, blueberry, Cyanococcus, database, Vaccinium, NP301, NP303, data.gov, ARS, |
| Online Access: | https://figshare.com/articles/dataset/BBGD_an_Online_Database_for_Blueberry_Genomic_Data/24660156 |
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| Summary: | <p>NOTE: This dataset is no longer publicly available.</p>
<p>BBGD (<a href="http://bioinformatics.towson.edu/BBGD/">http://bioinformatics.towson.edu/BBGD/</a>) was developed as a database for blueberry genomics. BBGD is both a sequence and gene expression database. It stores both EST and microarray data and allows scientists to correlate expression profiles with gene function. BBGD is a public online database. "Presently, the main focus of the database is the identification of genes in blueberry that are significantly induced or suppressed after low temperature exposure. "</p>
<p>To gain a better understanding of changes in gene expression associated with cold acclimation in blueberry, the Rowland laboratory (USDA-ARS, Beltsville, MD) has undertaken a genomics approach based on the analysis of Expressed Sequence Tags (ESTs). Initially, two standard cDNA libraries were constructed using RNA from cold-acclimated and non-acclimated floral buds of the blueberry cultivar ‘Bluecrop’ (<em>Vaccinium corymbosum</em> L.) and about 1200 5’-end ESTs were generated from each of the libraries. About 100 3’-end ESTs were generated from the cold-acclimated library as well.</p>
<p>The Blueberry EST database contains EST sequences from a number blueberry libraries including cold acclimated and non-acclimated libraries. It also includes forward and reverse subtractive libraries.</p>
<p>You can query the sequence database by clone ID, accession number or gene (clone) name below. Or you can get a list (in tabular) format of all the clones in a particular library by clicking on the library name on the left side navigation bar.</p>
<p>Attribution for photo: <br><a href="http://www.ars.usda.gov/is/graphics/photos/sep12/d2601-1.htm">D2601-1 - Blueberry plant:</a> Copyright free, public domain photo by Mark Ehlenfeldt</p> |
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