Functional Annotation for 797 plant ns Lipid Transfer Protein
This is the list of all the functional annotations about the 797 nsLTP sequences used for our work "Comprehensive classification of the plant non-specific lipid transfer protein superfamily towards its Sequence – Structure – Function analysis". <br>It might be useful for any studies in sequence-structure-function relationships (this is the largest dataset used in a phylogeny study to date). <br> The information is provided as a csv and an xlsx file organized as follows <br> Column A contains the database ID used for our study.<br> Column B contains the nsLTP Type (if available and as stated by initial authors) together with the organism 5 letters code. <br> Column C: LTP name <br> Column D: UniProt page if it exists (URL) <br> Column E: protein sequence (without propeptide) <br> The annotations are displayed in column G to L with ontology (e.g.: GO for Gene Ontology) then the term of the ontology and a link to its description, the level of evidence (see guide : http://geneontology.org/docs/guide-go-evidence-codes/), additional information, reference in the literature (author + article DOI) <br> If a second annotation is available, the same kind of information is added in new columns on the right. <br> NB: Sequence number 526, 600 and 693 were removed during the study (redundancy)
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| Format: | Biological data biblioteca |
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CIRAD Dataverse
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| Subjects: | Agricultural Sciences, Computer and Information Science, Medicine, Health and Life Sciences, Plant protein, DNA sequence, proteins, |
| Online Access: | http://dx.doi.org/10.18167/DVN1/1O5UAK |
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| Summary: | This is the list of all the functional annotations about the 797 nsLTP sequences used for our work "Comprehensive classification of the plant non-specific lipid transfer protein superfamily towards its Sequence – Structure – Function analysis". <br>It might be useful for any studies in sequence-structure-function relationships (this is the largest dataset used in a phylogeny study to date). <br>
The information is provided as a csv and an xlsx file organized as follows <br>
Column A contains the database ID used for our study.<br>
Column B contains the nsLTP Type (if available and as stated by initial authors) together with the organism 5 letters code. <br>
Column C: LTP name <br>
Column D: UniProt page if it exists (URL) <br>
Column E: protein sequence (without propeptide) <br>
The annotations are displayed in column G to L with ontology (e.g.: GO for Gene Ontology) then the term of the ontology and a link to its description, the level of evidence (see guide : http://geneontology.org/docs/guide-go-evidence-codes/), additional information, reference in the literature (author + article DOI) <br>
If a second annotation is available, the same kind of information is added in new columns on the right. <br>
NB: Sequence number 526, 600 and 693 were removed during the study (redundancy) |
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