Data and scripts underlying the publication: Unveiling the roles of temporal periodicity, the spatial environment and behavioural modes in terrestrial animal movement
Data and scripts underlying the publication: Unveiling the roles of temporal periodicity, the spatial environment and behavioural modes in terrestrial animal movement. The RData file Linssen_2024_JMovEcol_data contains everything needed to be able to run the code for the analysis: - Data tables with location data (timestamp, x, y...), one for each species. These data have been pre-processed, cleaned and annotated with environmental covariates as described in the manuscript. - A custom function collectmuHMMoutput(), which is used to collect all the relevant components of a HMM fit (the model itself, starting parameters, Viterbi decoding et cetera) into one list object. - A custom function mutatePar0(), which takes starting parameters for a model and creates four sets of perturbations of those starting values (as described in the manuscript under Model fitting). The R file Linssen_2024_JMovEcol_script contains the code needed to run the analysis. The code can be ran from top to bottom to run the analysis for eland; for wildebeest and zebra the "species" parameter in line 13 should be set to either of these.
| Main Authors: | , , |
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| Format: | Dataset biblioteca |
| Published: |
Wageningen University & Research
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| Subjects: | GPS tracking, diurnal activity, foraging, herbivore, savanna ecology, ungulate movement, wildlife activity, |
| Online Access: | https://research.wur.nl/en/datasets/data-and-scripts-underlying-the-publication-unveiling-the-roles-o |
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