ReDU: a framework to find and reanalyze public mass spectrometry data

ReDU: a framework to find and reanalyze public mass spectrometry data

We present ReDU (https://redu.ucsd.edu/), a system for metadata capture of public mass spectrometry-based metabolomics data, with validated controlled vocabularies. Systematic capture of knowledge enables the reanalysis of public data and/or co-analysis of one’s own data. ReDU enables multiple types of analyses, including finding chemicals and associated metadata, comparing the shared and different chemicals between groups of samples, and metadata-filtered, repository-scale molecular networking.

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Bibliographic Details
Main Authors: Jarmusch, Alan K., Wang, Mingxun, Aceves, Christine M., Advani, Rohit S., Aguirre, Shaden, Aksenov, Alexander A., Aleti, Gajender, Aron, Allegra T., Bauermeister, Anelize, Bolleddu, Sanjana, Bouslimani, Amina, Caraballo Rodriguez, Andres Mauricio, Chaar, Rama, Coras, Roxana, Elijah, Emmanuel O., Ernst, Madeleine, Gauglitz, Julia M., Gentry, Emily C., Husband, Makhai, Jarmusch, Scott A., Jones, Kenneth L., Kamenik, Zdenek, Le Gouellec, Audrey, Lu, Aileen, McCall, Laura Isobel, McPhail, Kerry L., Meehan, Michael J., Melnik, Alexey V., Menezes, Riya C., Montoya Giraldo, Yessica Alejandra, Nguyen, Ngoc Hung, Nothias, Louis Felix, Nothias-Esposito, Mélissa, Panitchpakdi, Morgan, Petras, Daniel, Quinn, Robert A., Sikora, Nicole, van der Hooft, Justin J.J., Vargas, Fernando, Vrbanac, Alison, Weldon, Kelly C., Knight, Rob, Bandeira, Nuno, Dorrestein, Pieter C.
Format: Article/Letter to editor biblioteca
Language:English
Subjects:Life Science,
Online Access:https://research.wur.nl/en/publications/redu-a-framework-to-find-and-reanalyze-public-mass-spectrometry-d
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https://research.wur.nl/en/publications/redu-a-framework-to-find-and-reanalyze-public-mass-spectrometry-d

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