SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles
To unlock the full potential of genome data and to enhance data interoperability and reusability of genome annotations we have developed SAPP, a Semantic Annotation Platform with Provenance. SAPP is designed as an infrastructure supporting FAIR de novo computational genomics but can also be used to process and analyze existing genome annotations. SAPP automatically predicts, tracks and stores structural and functional annotations and associated dataset- and element-wise provenance in a Linked Data format, thereby enabling information mining and retrieval with Semantic Web technologies. This greatly reduces the administrative burden of handling multiple analysis tools and versions thereof and facilitates multi-level large scale comparative analysis.
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dig-wur-nl-wurpubs-5356452024-08-14 Koehorst, Jasper J. van Dam, Jesse C.J. Saccenti, Edoardo Martins Dos Santos, Vitor A.P. Suarez-Diez, Maria Schaap, Peter J. Article/Letter to editor Bioinformatics 34 (2018) 8 ISSN: 1367-4803 SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles 2018 To unlock the full potential of genome data and to enhance data interoperability and reusability of genome annotations we have developed SAPP, a Semantic Annotation Platform with Provenance. SAPP is designed as an infrastructure supporting FAIR de novo computational genomics but can also be used to process and analyze existing genome annotations. SAPP automatically predicts, tracks and stores structural and functional annotations and associated dataset- and element-wise provenance in a Linked Data format, thereby enabling information mining and retrieval with Semantic Web technologies. This greatly reduces the administrative burden of handling multiple analysis tools and versions thereof and facilitates multi-level large scale comparative analysis. en application/pdf https://research.wur.nl/en/publications/sapp-functional-genome-annotation-and-analysis-through-a-semantic 10.1093/bioinformatics/btx767 https://edepot.wur.nl/444522 Life Science https://creativecommons.org/licenses/by-nc/4.0/ https://creativecommons.org/licenses/by-nc/4.0/ Wageningen University & Research |
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Life Science Life Science Koehorst, Jasper J. van Dam, Jesse C.J. Saccenti, Edoardo Martins Dos Santos, Vitor A.P. Suarez-Diez, Maria Schaap, Peter J. SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles |
| description |
To unlock the full potential of genome data and to enhance data interoperability and reusability of genome annotations we have developed SAPP, a Semantic Annotation Platform with Provenance. SAPP is designed as an infrastructure supporting FAIR de novo computational genomics but can also be used to process and analyze existing genome annotations. SAPP automatically predicts, tracks and stores structural and functional annotations and associated dataset- and element-wise provenance in a Linked Data format, thereby enabling information mining and retrieval with Semantic Web technologies. This greatly reduces the administrative burden of handling multiple analysis tools and versions thereof and facilitates multi-level large scale comparative analysis. |
| format |
Article/Letter to editor |
| topic_facet |
Life Science |
| author |
Koehorst, Jasper J. van Dam, Jesse C.J. Saccenti, Edoardo Martins Dos Santos, Vitor A.P. Suarez-Diez, Maria Schaap, Peter J. |
| author_facet |
Koehorst, Jasper J. van Dam, Jesse C.J. Saccenti, Edoardo Martins Dos Santos, Vitor A.P. Suarez-Diez, Maria Schaap, Peter J. |
| author_sort |
Koehorst, Jasper J. |
| title |
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles |
| title_short |
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles |
| title_full |
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles |
| title_fullStr |
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles |
| title_full_unstemmed |
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles |
| title_sort |
sapp: functional genome annotation and analysis through a semantic framework using fair principles |
| url |
https://research.wur.nl/en/publications/sapp-functional-genome-annotation-and-analysis-through-a-semantic |
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1813198196322598912 |