Semantic systems biology of prokaryotes : heterogeneous data integration to understand bacterial metabolism

by van Dam, Jesse C.J.

NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis

by Poncheewin, Wasin, Hermes, Gerben D.A., Van Dam, Jesse C.J., Koehorst, Jasper J., Smidt, Hauke, Schaap, Peter J.

Regulation of three virulence strategies of Mycobacterium tuberculosis : A success story

by Zondervan, Niels A., Van Dam, Jesse C.J., Schaap, Peter J., Martins dos Santos, Vitor A.P., Suarez-Diez, Maria

Consistency, inconsistency, and ambiguity of metabolite names in biochemical databases used for genome-scale metabolic modelling

by Pham, Nhung, van Heck, Ruben G.A., van Dam, Jesse C.J., Schaap, Peter J., Saccenti, Edoardo, Suarez-Diez, Maria

SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles

by Koehorst, Jasper J., van Dam, Jesse C.J., Saccenti, Edoardo, Martins Dos Santos, Vitor A.P., Suarez-Diez, Maria, Schaap, Peter J.

SyNDI : Synchronous network data integration framework

by Lindfors, Erno, van Dam, Jesse C.J., Lam, Carolyn Ming Chi, Zondervan, Niels A., Martins dos Santos, Vitor A.P., Suarez-Diez, Maria

The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation

by van Dam, Jesse C.J., Koehorst, Jasper J., Vik, Jon Olav, Martins dos Santos, Vitor A.P., Schaap, Peter J., Suarez-Diez, Maria

Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data

by Koehorst, Jasper J., van Dam, Jesse C.J., van Heck, Ruben G.A., Saccenti, Edoardo, Martins dos Santos, Vitor, Suarez-Diez, Maria, Schaap, Peter J.

SALARECON connects the Atlantic salmon genome to growth and feed efficiency

by Zakhartsev, Maksim, Rotnes, Filip, Gulla, Marie, Øyås, Ove, van Dam, Jesse C.J., Suarez-Diez, Maria, Grammes, Fabian, Hafþórsson, Róbert Anton, van Helvoirt, Wout, Koehorst, Jasper J., Schaap, Peter J., Jin, Yang, Mydland, Liv Torunn, Gjuvsland, Arne B., Sandve, Simen R., Martins dos Santos, Vitor A.P., Vik, Jon Olav