Post-extinction recovery of the Phanerozoic oceans and biodiversity hotspots

21 pages, 3 figures, supplementary information https://doi.org/10.1038/s41586-022-04932-6.-- Data availability: Fossil diversity digitized data and those data downloaded from the Sepkoski’s Online Genus Database (http://strata.geology.wisc.edu/jack/) are provided as source data with this paper. Diversity data downloaded from the Ocean Biodiversity Information System (OBIS) database (www.obis.org) are also provided as source data with this paper. Source data are provided with this paper.-- Code availability: The coupled palaeogeographical–diversification model presented here uses input data of seafloor age distributions and palaeoenvironmental conditions from the siwill22/agegrid-0.1 v1-alpha palaeogeographical model and the cGENIE Earth system model, respectively. The code used to reconstruct seafloor age distributions from GPlates full-plate tectonic reconstructions is available at Zenodo (https://doi.org/10.5281/zenodo.3271360). The code for the version of the ‘muffin’ release of the cGENIE Earth system model used in this paper is tagged as v0.9.30, and is available at Zenodo (https://doi.org/10.5281/zenodo.6676435). Configuration files for the specific experiments presented in the paper can be found in the directory: genie-userconfigs/PUBS/published/Cermeno_et_al.2022. Details of the experiments, plus the command line needed to run each one, are given in the readme.txt file in that directory. The code for the muffingen boundary file generator, is available at Zenodo (https://doi.org/10.5281/zenodo.6676451). The code for the coupled palaeogeographical–diversification model is available at Zenodo (https://doi.org/10.5281/zenodo.6535496). The code is also available at GitHub (https://github.com/CarmenGarciaComas/INDITEK); this is the recommended mode of access as it will contain any updates and clarifications

Bibliographic Details

Main Authors:	Cermeño, Pedro, García-Comas, Carmen, Pohl, Alexandre, Williams, Simon, Benton, Michael J., Chaudhary, Chhaya, Le Gland, Guillaume, Müller, R. Dietmar, Ridgwell, Andy, Vallina, Sergio M.
Other Authors:	Ministerio de Ciencia, Innovación y Universidades (España)
Format:	artículo biblioteca
Language:	English
Published:	Nature Publishing Group 2022-07
Online Access:	http://hdl.handle.net/10261/279302 http://dx.doi.org/10.13039/501100011033 http://dx.doi.org/10.13039/501100000923 http://dx.doi.org/10.13039/501100000780 http://dx.doi.org/10.13039/501100001809
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