Rice Galaxy: an open resource for plant science published
Rice Galaxy (http://galaxy.irri.org) is a publicly available website for bioinformatic analyses using 3000 rice genomes sequenced from IRRI's rice genbank (3KRG project, https://gigascience.biomedcentral.com/articles/10.1186/2047-217X-3-7), Antenna Panel (rice genotypes that act as sensors for environmental changes, https://agritrop.cirad.fr/590501/) and other specialized datasets. Tools are available from the galaxy tool shed (http://galaxy toolshed.excellenceinbreeding.org) including for designing single-nucleotide polymorphism assays, analyzing genome-wide association studies, population diversity, rice−bacterial pathogen diagnostics, and a suite of published genomic prediction methods.
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| Main Author: | |
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| Format: | Case Study biblioteca |
| Language: | English |
| Published: |
2019-12-31
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| Subjects: | rice, genotypes, methods, genomes, polymorphism, population, tools, pathogens, sciences, plants, sensors, nucleotides, prediction, association, case studies, agrifood systems, rural development, |
| Online Access: | https://hdl.handle.net/10568/121728 |
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