Triticum urartu strain:PI 428198 Transcriptome or Gene expression
For this project, we have sequenced, assembled and annotated a transcriptome of a diploid wheat Triticum urartu accession PI 428198. The sequencing libraries were prepared from shoot and root tissues harvested from 2-3 week old seedlings. All sequencing was carried out on the Illumina HiSeq platform using the 100 bp pair-end protocol (248.5 million reads). The assembly was constructed using a multiple k-mer approach with a de novo assembly algorithm implemented in CLC Genomics Workbench 5.5 and additional redundancy reduction with CD-HIT and blast2cap3 programs. Open reading frames and proteins were predicted using BLASTX searches and a findorf algorithm.
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| Main Authors: | , |
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| Format: | Dataset biblioteca |
| Published: |
2013
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| Subjects: | Genetics, Triticum urartu, PI 428198, eEukaryotes, transcriptome, |
| Online Access: | https://figshare.com/articles/dataset/Triticum_urartu_strain_PI_428198_Transcriptome_or_Gene_expression/25079327 |
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