Leptinotarsa decemlineata genome annotations v0.5.3
<p>The <em>Leptinotarsa decemlineata</em> genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. This dataset presents the <em>Leptinotarsa decemlineata</em> gene set BCM_v_0.5.3, which was generated computationally. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Leptinotarsa decemlineata genome assembly 1.0. Further annotation method details will be available in a forthcoming publication.</p> <p>NOTE: This gene set is an unstable pre-release (v0.5.3), and was provided to facilitate manual curation and analyses before the official gene set is released. Gene identifiers from this gene set will likely not be maintained.</p> <p>If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: <a href="https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use">https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use</a></p> <div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Leptinotarsa decemlineata genome annotations v0.5.3 for genome assembly v1.0.</p> <p>File Name: Ldec_genome_annotations_BCM_version_0.5.3.tar.gz</p><p>Resource Description: </p><p>The attached tar.gz archive (Ldec_genome_annotations_BCM_version_0.5.3.tar.gz) contains the following files:</p> <p>LDEC.Analysis.gff3.gz. This file contains evidence gff3 format underlying the final gene predictions.</p> <p>LDEC.CDS.fna.gz. CDS sequences of <em>Leptinotarsa decemlineata</em> genome annotations v0.5.3.</p> <p>LDEC.faa.gz Amino acid sequences of <em>Leptinotarsa decemlineata</em> genome annotations v0.5.3.</p> <p>LDEC.fna.gz cDNA sequences of <em>Leptinotarsa decemlineata</em> genome annotations v0.5.3.</p> <p>LDEC.Models.gff3.gz Gff3 of all gene predictions of <em>Leptinotarsa decemlineata</em> genome annotations v0.5.3, modified by the National Agricultural Library to be compliant with gff3 specifications.</p> <p></p></li></ul>
Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Format: | Dataset biblioteca |
Published: |
2017
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Subjects: | Genomics and transcriptomics, Genetics, i5k, Insects, Leptinotarsa decemlineata, Colorado Potato Beetle, data.gov, ARS, |
Online Access: | https://figshare.com/articles/dataset/Leptinotarsa_decemlineata_genome_annotations_v0_5_3/24680946 |
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