Diaphorina citri genome assembly Diaci 1.9
<p>Diaci1.9 is interim version of the <em>Diaphorina citri</em> psyllid genome based on Pacbio long reads. We have generated 36.2Gb of Pacbio long reads from 41 SMRT cells with a coverage of 80X for the 400-450Mb psyllid genome. The canu assembler was used to create an interim assembly with a contig N50 of 115.8kb and 8352 contigs. DIACI v1.9 has 8,352 contigs compared to 161,988 contigs in Diaci1.1 genome assembly. It has a contig N50 of 115.8kb and does not contain any Ns. Please note that this is an interim assembly so we will not be annotating it.</p> <p>This project was funded by the U.S. Department of Agriculture under the DEVELOPING AN INFRASTRUCTURE AND PRODUCT TEST PIPELINE TO DELIVER NOVEL THERAPIES FOR CITRUS GREENING DISEASE grant. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Diaphorina citri genome assembly Diaci 1.9.</p> <p>File Name: DIACI<em>v1.9.fasta</em>.gz</p><p>Resource Description: This resource is a fasta file of the DIACI_v1.9 genome assembly.</p></li></ul><p></p>
| Main Authors: | , , , |
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| Format: | Dataset biblioteca |
| Published: |
2017
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| Subjects: | Genomics and transcriptomics, Host-parasite interactions, Genetics, Environmental sciences, genome assembly, Diaphorina citri, Asian citrus psyllid, |
| Online Access: | https://figshare.com/articles/dataset/Diaphorina_citri_genome_assembly_Diaci_1_9/24660615 |
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