Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity

by Maistrenko, Oleksandr M., Mende, Daniel R., Luetge, Mechthild, Hildebrand, Falk, Schmidt, Thomas Sebastian, Li, Simone S., Rodrigues, Joao Frederico Matias, von Mering, Christian, Coelho, Luis Pedro, Huerta-Cepas, Jaime, Sunagawa, Shinichi, Bork, Peer
Published 2020-05-01

proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes

by Mende, Daniel R., Letunic, Ivica, Maistrenko, Oleksandr M., Schmidt, Thomas Sebastian, Milanese, Alessio, Paoli, Lucas, Hernández-Plaza, Ana, Orakov, Askarbek, Forslund, Sofía K., Sunagawa, Shinichi, Zeller, Georg, Huerta-Cepas, Jaime, Coelho, Luis Pedro, Bork, Peer
Published 2020-01-01

Drivers and Determinants of Strain Dynamics Following Faecal Microbiota Transplantation

by Schmidt, Thomas S.B., Li, Simone S., Maistrenko, Oleksandr M., Akkani, Wasiu, Coelho, Luis P., Dolai, Sibasish, Fullam, Anthony, Glazek, Anna, Hercog, Rajna, Herrema, Hilde, Jung, Ferris, Kandels, Stefanie, Orakov, Askarbek, Van Rossum, Thea, Benes, Vladimir, Borody, Thomas J., de Vos, Willem, Ponsioen, Cyriel Y., Nieuwdorp, Max, Bork, Peer

proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes

by Fullam, Anthony, Letunic, Ivica, Schmidt, Thomas Sebastian, Ducarmon, Quinten R., Karcher, Nicolai, Khedkar, Supriya, Kuhn, Michael, Larralde, Martin, Maistrenko, Oleksandr M., Malfertheiner, Lukas, Milanese, Alessio, Rodrigues, Joao Frederico Matias, Sanchis-López, Claudia, Schudoma, Christian, Szklarczyk, Damian, Sunagawa, Shinichi, Zeller, Georg, Huerta-Cepas, Jaime, von Mering, Christian, Bork, Peer, Mende, Daniel R.
Published 2023-01-06

Drivers and determinants of strain dynamics following fecal microbiota transplantation

by Schmidt, Thomas S.B., Li, Simone S., Maistrenko, Oleksandr M., Akanni, Wasiu, Coelho, Luis Pedro, Dolai, Sibasish, Fullam, Anthony, Glazek, Anna M., Hercog, Rajna, Herrema, Hilde, Jung, Ferris, Kandels, Stefanie, Orakov, Askarbek, Thielemann, Roman, von Stetten, Moritz, Van Rossum, Thea, Benes, Vladimir, Borody, Thomas J., de Vos, Willem M., Ponsioen, Cyriel Y., Nieuwdorp, Max, Bork, Peer

Towards the biogeography of prokaryotic genes

by Coelho, Luis Pedro, Alves, Renato, Del Río, Álvaro Rodríguez, Myers, Pernille Neve, Cantalapiedra, Carlos P, Giner-Lamia, Joaquín, Schmidt, Thomas Sebastian, Mende, Daniel R., Orakov, Askarbek, Letunic, Ivica, Hildebrand, Falk, Van Rossum, Thea, Forslund, Sofía K., Khedkar, Supriya, Maistrenko, Oleksandr M., Pan, Shaojun, Jia, Longhao, Ferretti, Pamela, Sunagawa, Shinichi, Zhao, Xing-Ming, Nielsen, Henrik Bjørn, Huerta-Cepas, Jaime, Bork, Peer
Published 2021-12-15

Drosophila Evolution over Space and Time (DEST) - A New Population Genomics Resource

by Kapun, Martin, Nunez, Joaquin C. B., Bogaerts-Márquez, María, Murga-Moreno, Jesús, Paris, Margot, Outten, Joseph, Coronado, Marta, Tern, Courtney, Rota-Stabelli, Omar, Garcia Guerreiro, Maria Pilar, Casillas, Sònia, Orengo, Dorcas J., Puerma, Eva, Kankare, Maaria, Ometto, Lino, Loeschcke, Volker, Onder, Banu Sebnem, Abbott, Jessica, Schaeffer, Stephen W., Rajpurohit, Subhash, Behrman, Emily L., Schou, Mads Fristrup, Merritt, Thomas J. S., Lazzaro, Brian P., Glaser-Schmitt, Amanda, Argyridou, Eliza, Staubach, Fabian, Wang, Yun, Tauber, Eran, Serga, Svitlana, Fabian, Daniel K., Dyer, Kelly A., Wheat, Christopher, Parsch, John, Grath, Sonja, Savic Veselinovic, Marija, Stamenkovic-Radak, Marina, Jelic, Mihailo, Buendía-Ruíz, Antonio J., Gómez-Julián, M. Josefa, Espinosa-Jimenez, M. Luisa, Gallardo-Jiménez, Francisco D., Patenkovic, Aleksandra, Eric, Katarina, Tanaskovic, Marija, Ullastres, Ana, Guio, Lain, Merenciano, Miriam, Guirao-Rico, Sara, Horváth, Vivien, Obbard, Darren, J., Pasyukova, Elena G., Alatortsev, Vladimir E., Vieira, Cristina P., Vieira, Jorge, Torres, J. Roberto, Kozeretska, Iryna, Maistrenko, Oleksandr M., Montchamp-Moreau, Catherine, Mukha, Dmitry V., Machado, Heather E., Lamb, Keric, Paulo, Tânia, Yusuf, Leeban, Barbadilla, Antonio, Petrov, Dmitri A., Schmidt, Paul S., González Pérez, Josefa, Flatt, Thomas, Bergland, Alan O.
Published 2021-12

Corrigendum to: Drosophila Evolution over Space and Time (DEST): a New Population Genomics Resource

by Kapun, Martin, Nunez, Joaquin C. B., Bogaerts-Márquez, María, Murga-Moreno, Jesús, Paris, Margot, Outten, Joseph, Coronado, Marta, Tern, Courtney, Rota-Stabelli, Omar, Garcia Guerreiro, Maria Pilar, Casillas, Sònia, Orengo, Dorcas J., Puerma, Eva, Kankare, Maaria, Ometto, Lino, Loeschcke, Volker, Onder, Banu Sebnem, Abbott, Jessica, Schaeffer, Stephen W., Rajpurohit, Subhash, Behrman, Emily L., Schou, Mads Fristrup, Merritt, Thomas J. S., Lazzaro, Brian P., Glaser-Schmitt, Amanda, Argyridou, Eliza, Staubach, Fabian, Wang, Yun, Tauber, Eran, Serga, Svitlana, Fabian, Daniel K., Dyer, Kelly A., Wheat, Christopher, Parsch, John, Grath, Sonja, Savic Veselinovic, Marija, Stamenkovic-Radak, Marina, Jelic, Mihailo, Buendía-Ruíz, Antonio J., Gómez-Julián, M. Josefa, Espinosa-Jimenez, M. Luisa, Gallardo-Jiménez, Francisco D., Patenkovic, Aleksandra, Eric, Katarina, Tanaskovic, Marija, Ullastres, Ana, Guio, Lain, Merenciano, Miriam, Guirao-Rico, Sara, Horváth, Vivien, Obbard, Darren, J., Pasyukova, Elena G., Alatortsev, Vladimir E., Vieira, Cristina P., Vieira, Jorge, Torres, J. Roberto, Kozeretska, Iryna, Maistrenko, Oleksandr M., Montchamp-Moreau, Catherine, Mukha, Dmitry V., Machado, Heather E., Lamb, Keric, Paulo, Tânia, Yusuf, Leeban, Barbadilla, Antonio, Petrov, Dmitri A., Schmidt, Paul S., González Pérez, Josefa, Flatt, Thomas, Bergland, Alan O.
Published 2022-01