Whole-genome sequencing for antimicrobial surveillance: species-specific quality thresholds and data evaluation from the network of the European Union Reference Laboratory for Anti...

by Holm Sorensen, Lauge, Karlsmose Pedersen, Susanne, During Jensen, Jacob, Lacy-Roberts, Niamh, Andrea, Athina, Brouwer, M.S.M., Veldman, K.T., Lou, Yan, Hoffmann, Maria, Hendriksen, Rene S.

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

by Hendriksen, Rene S., Munk, Patrick, Njage, Patrick, van Bunnik, Bram, Mcnally, Luke, Lukjancenko, Oksana, Röder, Timo, Nieuwenhuijse, David, Pedersen, Susanne Karlsmose, Kjeldgaard, Jette, van de Schans, Milou, Zuidema, Tina, Aarestrup, Frank M.

One Health surveillance—A cross-sectoral detection, characterization, and notification of foodborne pathogens

by Tast Lahti, Elina, Karamehmedovic, Nadja, Riedel, Hilde, Blom, Linnea, Boel, Jeppe, Delibato, Elisabetta, Denis, Martine, van Essen-Zandbergen, Alieda, Garcia-Fernandez, Aurora, Hendriksen, Rene, Heydecke, Anna, van Hoek, Angela H.A.M., Huby, Tom, Kwit, Renata, Lucarelli, Claudia, Lundin, Karl, Michelacci, Valeria, Owczarek, Slawomir, Ring, Isaac, Sejer Kjeldgaard, Jette, Sjögren, Ingegerd, Skóra, Milena, Torpdahl, Mia, Ugarte-Ruiz, María, Veldman, Kees, Ventola, Eleonora, Zajac, Magdalena, Jernberg, Cecilia

A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia

by Cuypers, Wim L., Meysman, Pieter, Weill, François Xavier, Hendriksen, Rene S., Beyene, Getenet, Wain, John, Nair, Satheesh, Chattaway, Marie A., Perez-Sepulveda, Blanca M., Ceyssens, Pieter Jan, de Block, Tessa, Lee, Winnie W.Y., Pardos de la Gandara, Maria, Kornschober, Christian, Moran-Gilad, Jacob, Veldman, Kees T., Cormican, Martin, Torpdahl, Mia, Fields, Patricia I., Černý, Tomáš, Hardy, Liselotte, Tack, Bieke, Mellor, Kate C., Thomson, Nicholas, Dougan, Gordon, Deborggraeve, Stijn, Jacobs, Jan, Laukens, Kris, Van Puyvelde, Sandra

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

by Hendriksen, Rene S., Munk, Patrick, Njage, Patrick, Van Bunnik, Bram, Mcnally, Luke, Lukjancenko, Oksana, Röder, Timo, Nieuwenhuijse, David, Pedersen, Susanne Karlsmose, Kjeldgaard, Jette, Kaas, Rolf S., Clausen, Philip Thomas Lanken Conradsen, Vogt, Josef Korbinian, Leekitcharoenphon, Pimlapas, Van De Schans, Milou G.M., Zuidema, Tina, De Roda Husman, Ana Maria, Rasmussen, Simon, Petersen, Bent, Amid, Clara, Cochrane, Guy, Sicheritz-ponten, Thomas, Schmitt, Heike, Alvarez, Jorge Raul Matheu, Aidara-kane, Awa, Pamp, Sünje J., Lund, Ole, Hald, Tine, Woolhouse, Mark, Koopmans, Marion P., Vigre, Håkan, Petersen, Thomas Nordahl, Aarestrup, Frank M.

Azithromycin resistance in Escherichia coli and Salmonella from food-producing animals and meat in Europe

by Ivanova, Mirena, Ovsepian, Armen, Leekitcharoenphon, Pimlapas, Seyfarth, Anne Mette, Mordhorst, Hanne, Otani, Saria, Koeberl-Jelovcan, Sandra, Milanov, Mihail, Kompes, Gordan, Liapi, Maria, Černý, Tomáš, Vester, Camilla T., Perrin-Guyomard, Agnès, Hammerl, Jens A., Grobbel, Mirjam, Valkanou, Eleni, Jánosi, Szilárd, Slowey, Rosemarie, Alba, Patricia, Carfora, Virginia, Avsejenko, Jelena, Pereckiene, Asta, Claude, Dominique, Zerafa, Renato, Veldman, Kees, Boland, Cécile, Garcia-Graells, Cristina, Wattiau, Pierre, Butaye, Patrick, Zając, Magdalena, Amaro, Ana, Clemente, Lurdes, Vaduva, Angela, Romascu, Luminita-Maria, Milita, Nicoleta-Manuela, Mojžišová, Andrea, Zdovc, Irena, Escribano, Maria, De Frutos Escobar, Cristina, Overesch, Gudrun, Teale, Christopher, Loneragan, Guy, Guerra, Beatriz, Beloeil, Pierre A., Brown, Amanda, Hendriksen, Rene, Bortolaia, Valeria, Kjeldgaard, Jette S.

Correction to: Setting a baseline for global urban virome surveillance in sewage

by Nieuwenhuijse, David F., Oude Munnink, Bas B., Phan, My V.T., Hendriksen, Rene S., Bego, Artan, Rees, Catherine, Neilson, Elizabeth Heather, Coventry, Kris, Collignon, Peter, Allerberger, Franz, Rahube, Teddie O., Oliveira, Guilherme, Ivanov, Ivan, Sopheak, Thet, Vuthy, Yith, Yost, Christopher K., Tabo, Djim Adjim, Cuadros-Orellana, Sara, Ke, Changwen, Zheng, Huanying, Baisheng, Li, Jiao, Xiaoyang, Donado-Godoy, Pilar, Coulibaly, Kalpy Julien, Hrenovic, Jasna, Jergović, Matijana, Karpíšková, Renáta, Elsborg, Bodil, Legesse, Mengistu, Eguale, Tadesse, Heikinheimo, Annamari, Villacis, Jose Eduardo, Sanneh, Bakary, Malania, Lile, Nitsche, Andreas, Brinkmann, Annika, Saba, Courage Kosi Setsoafia, Kocsis, Bela, Solymosi, Norbert, Thorsteinsdottir, Thorunn R., Hatha, Abdulla Mohamed, Alebouyeh, Masoud, Morris, Dearbhaile, O’Connor, Louise, Cormican, Martin, Moran-Gilad, Jacob, van Passel, Mark, van de Schans, Milou G.M., Zuidema, Tina, Koopmans, Marion P.G.

COMPARE global sewage snapshot virome sequencing part

by Nieuwenhuijse, David F., Oude Munnink, Bas B., Phan, My V.T., Hendriksen, Rene S., Bego, Artan, Rees, Catherine, Neilson, Elizabeth Heather, Coventry, Kris, Collignon, Peter, Allerberger, Franz, Rahube, Teddie O., Oliveira, Guilherme, Ivanov, Ivan, Sopheak, Thet, Vuthy, Yith, Yost, Christopher K., Tabo, Djim Adjim, Cuadros-Orellana, Sara, Ke, Changwen, Zheng, Huanying, Baisheng, Li, Jiao, Xiaoyang, Donado-Godoy, Pilar, Coulibaly, Kalpy Julien, Hrenovic, Jasna, Jergović, Matijana, Karpíšková, Renáta, Elsborg, Bodil, Legesse, Mengistu, Eguale, Tadesse, Heikinheimo, Annamari, Villacis, Jose Eduardo, Sanneh, Bakary, Malania, Lile, Nitsche, Andreas, Brinkmann, Annika, Saba, Courage Kosi Setsoafia, Kocsis, Bela, Solymosi, Norbert, Thorsteinsdottir, Thorunn R., Hatha, Abdulla Mohamed, Alebouyeh, Masoud, Morris, Dearbhaile, O’Connor, Louise, Cormican, Martin, Moran-Gilad, Jacob, van Passel, Mark, van de Schans, Milou G.M., Zuidema, Tina, Koopmans, Marion P.G.

Setting a baseline for global urban virome surveillance in sewage

by Nieuwenhuijse, David F., Oude Munnink, Bas B., Phan, My V.T., Hendriksen, Rene S., Bego, Artan, Rees, Catherine, Neilson, Elizabeth Heather, Coventry, Kris, Collignon, Peter, Allerberger, Franz, Rahube, Teddie O., Oliveira, Guilherme, Ivanov, Ivan, Sopheak, Thet, Vuthy, Yith, Yost, Christopher K., Tabo, Djim Adjim, Cuadros-Orellana, Sara, Ke, Changwen, Zheng, Huanying, Baisheng, Li, Jiao, Xiaoyang, Donado-Godoy, Pilar, Coulibaly, Kalpy Julien, Hrenovic, Jasna, Jergović, Matijana, Karpíšková, Renáta, Elsborg, Bodil, Legesse, Mengistu, Eguale, Tadesse, Heikinheimo, Annamari, Villacis, Jose Eduardo, Sanneh, Bakary, Malania, Lile, Nitsche, Andreas, Brinkmann, Annika, Saba, Courage Kosi Setsoafia, Kocsis, Bela, Solymosi, Norbert, Thorsteinsdottir, Thorunn R., Hatha, Abdulla Mohamed, Alebouyeh, Masoud, Morris, Dearbhaile, O’Connor, Louise, Cormican, Martin, Moran-Gilad, Jacob, van Passel, Mark, van de Schans, Milou G.M., Zuidema, Tina, Koopmans, Marion P.G.