Optimizing nucleic acid extraction from thyroid fine-needle aspiration cells in stained slides, formalin-fixed/paraffin-embedded tissues, and long-term stored blood samples

OBJECTIVE: Adequate isolation of nucleic acids from peripheral blood, fine-needle aspiration cells in stained slides, and fresh and formalin-fixed/paraffin-embedded tissues is crucial to ensure the success of molecular endocrinology techniques, especially when samples are stored for long periods, or when no other samples can be collected from patients who are lost to follow-up. Here, we evaluate several procedures to improve current methodologies for DNA (salting-out) and RNA isolation. MATERIALS AND METHODS: We used proteinase K treatment, heat shock, and other adaptations to increase the amount and quality of the material retrieved from the samples. RESULTS: We successfully isolated DNA and RNA from the samples described above, and this material was suitable for PCR, methylation profiling, real-time PCR and DNA sequencing. CONCLUSION: The techniques herein applied to isolate nucleic acids allowed further reliable molecular analyses. Arq Bras Endocrinol Metab. 2012;56(9):618-26

Saved in:
Bibliographic Details
Main Authors: Kizys,Marina M. L., Cardoso,Mirian G., Lindsey,Susan C., Harada,Michelle Y., Soares,Fernando A., Melo,Maria Clara C., Montoya,Marlyn Z., Kasamatsu,Teresa S., Kunii,Ilda S., Giannocco,Gisele, Martins,João Roberto M., Cerutti,Janete M., Maciel,Rui M. B., Dias-da-Silva,Magnus R.
Format: Digital revista
Language:English
Published: Sociedade Brasileira de Endocrinologia e Metabologia 2012
Online Access:http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0004-27302012000900004
Tags: Add Tag
No Tags, Be the first to tag this record!
id oai:scielo:S0004-27302012000900004
record_format ojs
spelling oai:scielo:S0004-273020120009000042013-01-15Optimizing nucleic acid extraction from thyroid fine-needle aspiration cells in stained slides, formalin-fixed/paraffin-embedded tissues, and long-term stored blood samplesKizys,Marina M. L.Cardoso,Mirian G.Lindsey,Susan C.Harada,Michelle Y.Soares,Fernando A.Melo,Maria Clara C.Montoya,Marlyn Z.Kasamatsu,Teresa S.Kunii,Ilda S.Giannocco,GiseleMartins,João Roberto M.Cerutti,Janete M.Maciel,Rui M. B.Dias-da-Silva,Magnus R. DNA RNA nucleic acid extraction FNA FFPE tissue blood OBJECTIVE: Adequate isolation of nucleic acids from peripheral blood, fine-needle aspiration cells in stained slides, and fresh and formalin-fixed/paraffin-embedded tissues is crucial to ensure the success of molecular endocrinology techniques, especially when samples are stored for long periods, or when no other samples can be collected from patients who are lost to follow-up. Here, we evaluate several procedures to improve current methodologies for DNA (salting-out) and RNA isolation. MATERIALS AND METHODS: We used proteinase K treatment, heat shock, and other adaptations to increase the amount and quality of the material retrieved from the samples. RESULTS: We successfully isolated DNA and RNA from the samples described above, and this material was suitable for PCR, methylation profiling, real-time PCR and DNA sequencing. CONCLUSION: The techniques herein applied to isolate nucleic acids allowed further reliable molecular analyses. Arq Bras Endocrinol Metab. 2012;56(9):618-26info:eu-repo/semantics/openAccessSociedade Brasileira de Endocrinologia e MetabologiaArquivos Brasileiros de Endocrinologia & Metabologia v.56 n.9 20122012-12-01info:eu-repo/semantics/articletext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0004-27302012000900004en10.1590/S0004-27302012000900004
institution SCIELO
collection OJS
country Brasil
countrycode BR
component Revista
access En linea
databasecode rev-scielo-br
tag revista
region America del Sur
libraryname SciELO
language English
format Digital
author Kizys,Marina M. L.
Cardoso,Mirian G.
Lindsey,Susan C.
Harada,Michelle Y.
Soares,Fernando A.
Melo,Maria Clara C.
Montoya,Marlyn Z.
Kasamatsu,Teresa S.
Kunii,Ilda S.
Giannocco,Gisele
Martins,João Roberto M.
Cerutti,Janete M.
Maciel,Rui M. B.
Dias-da-Silva,Magnus R.
spellingShingle Kizys,Marina M. L.
Cardoso,Mirian G.
Lindsey,Susan C.
Harada,Michelle Y.
Soares,Fernando A.
Melo,Maria Clara C.
Montoya,Marlyn Z.
Kasamatsu,Teresa S.
Kunii,Ilda S.
Giannocco,Gisele
Martins,João Roberto M.
Cerutti,Janete M.
Maciel,Rui M. B.
Dias-da-Silva,Magnus R.
Optimizing nucleic acid extraction from thyroid fine-needle aspiration cells in stained slides, formalin-fixed/paraffin-embedded tissues, and long-term stored blood samples
author_facet Kizys,Marina M. L.
Cardoso,Mirian G.
Lindsey,Susan C.
Harada,Michelle Y.
Soares,Fernando A.
Melo,Maria Clara C.
Montoya,Marlyn Z.
Kasamatsu,Teresa S.
Kunii,Ilda S.
Giannocco,Gisele
Martins,João Roberto M.
Cerutti,Janete M.
Maciel,Rui M. B.
Dias-da-Silva,Magnus R.
author_sort Kizys,Marina M. L.
title Optimizing nucleic acid extraction from thyroid fine-needle aspiration cells in stained slides, formalin-fixed/paraffin-embedded tissues, and long-term stored blood samples
title_short Optimizing nucleic acid extraction from thyroid fine-needle aspiration cells in stained slides, formalin-fixed/paraffin-embedded tissues, and long-term stored blood samples
title_full Optimizing nucleic acid extraction from thyroid fine-needle aspiration cells in stained slides, formalin-fixed/paraffin-embedded tissues, and long-term stored blood samples
title_fullStr Optimizing nucleic acid extraction from thyroid fine-needle aspiration cells in stained slides, formalin-fixed/paraffin-embedded tissues, and long-term stored blood samples
title_full_unstemmed Optimizing nucleic acid extraction from thyroid fine-needle aspiration cells in stained slides, formalin-fixed/paraffin-embedded tissues, and long-term stored blood samples
title_sort optimizing nucleic acid extraction from thyroid fine-needle aspiration cells in stained slides, formalin-fixed/paraffin-embedded tissues, and long-term stored blood samples
description OBJECTIVE: Adequate isolation of nucleic acids from peripheral blood, fine-needle aspiration cells in stained slides, and fresh and formalin-fixed/paraffin-embedded tissues is crucial to ensure the success of molecular endocrinology techniques, especially when samples are stored for long periods, or when no other samples can be collected from patients who are lost to follow-up. Here, we evaluate several procedures to improve current methodologies for DNA (salting-out) and RNA isolation. MATERIALS AND METHODS: We used proteinase K treatment, heat shock, and other adaptations to increase the amount and quality of the material retrieved from the samples. RESULTS: We successfully isolated DNA and RNA from the samples described above, and this material was suitable for PCR, methylation profiling, real-time PCR and DNA sequencing. CONCLUSION: The techniques herein applied to isolate nucleic acids allowed further reliable molecular analyses. Arq Bras Endocrinol Metab. 2012;56(9):618-26
publisher Sociedade Brasileira de Endocrinologia e Metabologia
publishDate 2012
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0004-27302012000900004
work_keys_str_mv AT kizysmarinaml optimizingnucleicacidextractionfromthyroidfineneedleaspirationcellsinstainedslidesformalinfixedparaffinembeddedtissuesandlongtermstoredbloodsamples
AT cardosomiriang optimizingnucleicacidextractionfromthyroidfineneedleaspirationcellsinstainedslidesformalinfixedparaffinembeddedtissuesandlongtermstoredbloodsamples
AT lindseysusanc optimizingnucleicacidextractionfromthyroidfineneedleaspirationcellsinstainedslidesformalinfixedparaffinembeddedtissuesandlongtermstoredbloodsamples
AT haradamichelley optimizingnucleicacidextractionfromthyroidfineneedleaspirationcellsinstainedslidesformalinfixedparaffinembeddedtissuesandlongtermstoredbloodsamples
AT soaresfernandoa optimizingnucleicacidextractionfromthyroidfineneedleaspirationcellsinstainedslidesformalinfixedparaffinembeddedtissuesandlongtermstoredbloodsamples
AT melomariaclarac optimizingnucleicacidextractionfromthyroidfineneedleaspirationcellsinstainedslidesformalinfixedparaffinembeddedtissuesandlongtermstoredbloodsamples
AT montoyamarlynz optimizingnucleicacidextractionfromthyroidfineneedleaspirationcellsinstainedslidesformalinfixedparaffinembeddedtissuesandlongtermstoredbloodsamples
AT kasamatsuteresas optimizingnucleicacidextractionfromthyroidfineneedleaspirationcellsinstainedslidesformalinfixedparaffinembeddedtissuesandlongtermstoredbloodsamples
AT kuniiildas optimizingnucleicacidextractionfromthyroidfineneedleaspirationcellsinstainedslidesformalinfixedparaffinembeddedtissuesandlongtermstoredbloodsamples
AT giannoccogisele optimizingnucleicacidextractionfromthyroidfineneedleaspirationcellsinstainedslidesformalinfixedparaffinembeddedtissuesandlongtermstoredbloodsamples
AT martinsjoaorobertom optimizingnucleicacidextractionfromthyroidfineneedleaspirationcellsinstainedslidesformalinfixedparaffinembeddedtissuesandlongtermstoredbloodsamples
AT ceruttijanetem optimizingnucleicacidextractionfromthyroidfineneedleaspirationcellsinstainedslidesformalinfixedparaffinembeddedtissuesandlongtermstoredbloodsamples
AT macielruimb optimizingnucleicacidextractionfromthyroidfineneedleaspirationcellsinstainedslidesformalinfixedparaffinembeddedtissuesandlongtermstoredbloodsamples
AT diasdasilvamagnusr optimizingnucleicacidextractionfromthyroidfineneedleaspirationcellsinstainedslidesformalinfixedparaffinembeddedtissuesandlongtermstoredbloodsamples
_version_ 1756372744732147712