New mitochondrial genomes of 39 soil dwelling Coleoptera from metagenome sequencing
High-throughput DNA methods hold great promise for the study of the hyperdiverse arthropod fauna of the soil. We used the mitochondrial metagenomic approach to generate 39 mitochondrial genomes from adult and larval specimens of Coleoptera collected from soil samples. The mitogenomes correspond to species from the families Carabidae (6), Chrysomelidae (1), Curculionidae (9), Dermestidae (1), Elateridae (1), Latridiidae (1), Scarabaeidae (3), Silvanidae (1), Staphylinidae (12), and Tenebrionidae (4). All the mitogenomes followed the putative ancestral gene order for Coleoptera. We provide the first available mitogenome for 30 genera of Coleoptera, including endogean representatives of the genera Torneuma, Coiffaitiella, Otiorhynchus, Oligotyphlopsis, and Typhlocharis.
Main Authors: | , , , , , , |
---|---|
Other Authors: | |
Format: | artículo biblioteca |
Published: |
Taylor & Francis
2019-07-12
|
Subjects: | Endogean, Next-generation sequencing, Mitochondrial metagenomics, Coleoptera, Soil, |
Online Access: | http://hdl.handle.net/10261/193168 http://dx.doi.org/10.13039/501100003329 |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
id |
dig-ipna-es-10261-193168 |
---|---|
record_format |
koha |
spelling |
dig-ipna-es-10261-1931682021-12-28T16:02:36Z New mitochondrial genomes of 39 soil dwelling Coleoptera from metagenome sequencing Andújar, Carmelo Arribas, Paula Motyka, Michal Bocek, Mathew Bocak, Ladislav Linard, Benjamin Vogler, Alfried P. Ministerio de Economía y Competitividad (España) Endogean Next-generation sequencing Mitochondrial metagenomics Coleoptera Soil High-throughput DNA methods hold great promise for the study of the hyperdiverse arthropod fauna of the soil. We used the mitochondrial metagenomic approach to generate 39 mitochondrial genomes from adult and larval specimens of Coleoptera collected from soil samples. The mitogenomes correspond to species from the families Carabidae (6), Chrysomelidae (1), Curculionidae (9), Dermestidae (1), Elateridae (1), Latridiidae (1), Scarabaeidae (3), Silvanidae (1), Staphylinidae (12), and Tenebrionidae (4). All the mitogenomes followed the putative ancestral gene order for Coleoptera. We provide the first available mitogenome for 30 genera of Coleoptera, including endogean representatives of the genera Torneuma, Coiffaitiella, Otiorhynchus, Oligotyphlopsis, and Typhlocharis. The study was funded by the NHM Biodiversity Initiative (UK) and the Spanish Ministry of Economy and Competitiveness (Ministerio de Economía y Competitividad) under a project with the number CGL2015-74178-JIN. Peer Reviewed 2019-10-22T15:18:20Z 2019-10-22T15:18:20Z 2019-07-12 2019-10-22T15:18:20Z artículo http://purl.org/coar/resource_type/c_6501 doi: 10.1080/23802359.2019.1637289 issn: 2380-2359 Mitochondrial DNA Part B 4(2): 2447-2450 (2019) http://hdl.handle.net/10261/193168 10.1080/23802359.2019.1637289 http://dx.doi.org/10.13039/501100003329 33365580 #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/CGL2015-74178-JIN Publisher's version https://doi.org/10.1080/23802359.2019.1637289 Sí open Taylor & Francis |
institution |
IPNA ES |
collection |
DSpace |
country |
España |
countrycode |
ES |
component |
Bibliográfico |
access |
En linea |
databasecode |
dig-ipna-es |
tag |
biblioteca |
region |
Europa del Sur |
libraryname |
Biblioteca del IPNA España |
topic |
Endogean Next-generation sequencing Mitochondrial metagenomics Coleoptera Soil Endogean Next-generation sequencing Mitochondrial metagenomics Coleoptera Soil |
spellingShingle |
Endogean Next-generation sequencing Mitochondrial metagenomics Coleoptera Soil Endogean Next-generation sequencing Mitochondrial metagenomics Coleoptera Soil Andújar, Carmelo Arribas, Paula Motyka, Michal Bocek, Mathew Bocak, Ladislav Linard, Benjamin Vogler, Alfried P. New mitochondrial genomes of 39 soil dwelling Coleoptera from metagenome sequencing |
description |
High-throughput DNA methods hold great promise for the study of the hyperdiverse arthropod fauna of the soil. We used the mitochondrial metagenomic approach to generate 39 mitochondrial genomes from adult and larval specimens of Coleoptera collected from soil samples. The mitogenomes correspond to species from the families Carabidae (6), Chrysomelidae (1), Curculionidae (9), Dermestidae (1), Elateridae (1), Latridiidae (1), Scarabaeidae (3), Silvanidae (1), Staphylinidae (12), and Tenebrionidae (4). All the mitogenomes followed the putative ancestral gene order for Coleoptera. We provide the first available mitogenome for 30 genera of Coleoptera, including endogean representatives of the genera Torneuma, Coiffaitiella, Otiorhynchus, Oligotyphlopsis, and Typhlocharis. |
author2 |
Ministerio de Economía y Competitividad (España) |
author_facet |
Ministerio de Economía y Competitividad (España) Andújar, Carmelo Arribas, Paula Motyka, Michal Bocek, Mathew Bocak, Ladislav Linard, Benjamin Vogler, Alfried P. |
format |
artículo |
topic_facet |
Endogean Next-generation sequencing Mitochondrial metagenomics Coleoptera Soil |
author |
Andújar, Carmelo Arribas, Paula Motyka, Michal Bocek, Mathew Bocak, Ladislav Linard, Benjamin Vogler, Alfried P. |
author_sort |
Andújar, Carmelo |
title |
New mitochondrial genomes of 39 soil dwelling Coleoptera from metagenome sequencing |
title_short |
New mitochondrial genomes of 39 soil dwelling Coleoptera from metagenome sequencing |
title_full |
New mitochondrial genomes of 39 soil dwelling Coleoptera from metagenome sequencing |
title_fullStr |
New mitochondrial genomes of 39 soil dwelling Coleoptera from metagenome sequencing |
title_full_unstemmed |
New mitochondrial genomes of 39 soil dwelling Coleoptera from metagenome sequencing |
title_sort |
new mitochondrial genomes of 39 soil dwelling coleoptera from metagenome sequencing |
publisher |
Taylor & Francis |
publishDate |
2019-07-12 |
url |
http://hdl.handle.net/10261/193168 http://dx.doi.org/10.13039/501100003329 |
work_keys_str_mv |
AT andujarcarmelo newmitochondrialgenomesof39soildwellingcoleopterafrommetagenomesequencing AT arribaspaula newmitochondrialgenomesof39soildwellingcoleopterafrommetagenomesequencing AT motykamichal newmitochondrialgenomesof39soildwellingcoleopterafrommetagenomesequencing AT bocekmathew newmitochondrialgenomesof39soildwellingcoleopterafrommetagenomesequencing AT bocakladislav newmitochondrialgenomesof39soildwellingcoleopterafrommetagenomesequencing AT linardbenjamin newmitochondrialgenomesof39soildwellingcoleopterafrommetagenomesequencing AT vogleralfriedp newmitochondrialgenomesof39soildwellingcoleopterafrommetagenomesequencing |
_version_ |
1777669822715265024 |