Is there adaptation in the human genome for taste perception and phase i biotransformation?
[Background] During the modern human expansion, new environmental pressures may have driven adaptation, especially in genes related to the perception of ingested substances and their detoxification. Consequently, positive (adaptive) selection may have occurred in genes related to taste, and in those related to the CYP450 system due to its role in biotransformation of potentially toxic compounds. A total of 91 genes (taste receptors and CYP450 superfamily) have been studied using Hierarchical Boosting, a powerful combination of different selection tests, to detect signatures of recent positive selection in three continental human populations: Northern Europeans (CEU), East Asians (CHB) and Africans (YRI). Analyses have been refined with selection analyses of the 26 populations of 1000 Genomes Project Phase 3.
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BioMed Central
2019-01-31
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Subjects: | Taste perception, Biotransformations, Cytochrome P450, Natural selection, CYP3A4, CYP3A43, CYP27A1, |
Online Access: | http://hdl.handle.net/10261/206087 http://dx.doi.org/10.13039/501100003329 http://dx.doi.org/10.13039/501100011033 http://dx.doi.org/10.13039/501100003176 http://dx.doi.org/10.13039/501100002809 |
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dig-ibe-es-10261-2060872021-12-27T16:00:35Z Is there adaptation in the human genome for taste perception and phase i biotransformation? Dobon, Begoña Rossell, Carla Walsh, Sandra Bertranpetit, Jaume Agencia Estatal de Investigación (España) Ministerio de Ciencia, Innovación y Universidades (España) Generalitat de Catalunya Ministerio de Economía y Competitividad (España) Ministerio de Educación, Cultura y Deporte (España) Taste perception Biotransformations Cytochrome P450 Natural selection CYP3A4 CYP3A43 CYP27A1 [Background] During the modern human expansion, new environmental pressures may have driven adaptation, especially in genes related to the perception of ingested substances and their detoxification. Consequently, positive (adaptive) selection may have occurred in genes related to taste, and in those related to the CYP450 system due to its role in biotransformation of potentially toxic compounds. A total of 91 genes (taste receptors and CYP450 superfamily) have been studied using Hierarchical Boosting, a powerful combination of different selection tests, to detect signatures of recent positive selection in three continental human populations: Northern Europeans (CEU), East Asians (CHB) and Africans (YRI). Analyses have been refined with selection analyses of the 26 populations of 1000 Genomes Project Phase 3. [Results] Genes related to taste perception have not been positively selected in the three continental human populations. This finding suggests that, contrary to results of previous studies, different allele frequencies among populations in genes such as TAS2R38 and TAS2R16 are not due to positive selection but to genetic drift. CYP1 and CYP2 genes, also previously considered to be under positive selection, did not show signatures of selective sweeps. However, three genes belonging to the CYP450 system have been identified by the Hierarchical Boosting as positively selected: CYP3A4 and CYP3A43 in CEU, and CYP27A1 in CHB. [Conclusions] No main adaptive differences are found in known taste receptor genes among the three continental human populations studied. However, there are important genetic adaptations in the cytochrome P450 system related to the Out of Africa expansion of modern humans. We confirmed that CYP3A4 and CYP3A43 are under selection in CEU, and we report for the first time CYP27A1 to be under positive selection in CHB. This study has been possible thanks to grant BFU2016–77961-P (AEI/FEDER, UE) awarded by the Agencia Estatal de Investigación (Ministerio de Ciencia, Innovación y Universidades, Spain) and with the support of Secretaria d’Universitats i Recerca del Departament d’Economia i Coneixement de la Generalitat de Catalunya (GRC 2017 SGR 702). Part of the “Unidad de Excelencia María de Maeztu” (MDM-2014-0370), funded by the Ministerio de Economía, Industria y Competividad (MINECO, Spain). BD is supported by F.P.U. grant FPU13/06813 from the Ministerio de Educación, Cultura y Deporte (Spain). SW is supported by F.P.I grant BES-2014-068994 from MINECO. 2020-04-01T08:37:33Z 2020-04-01T08:37:33Z 2019-01-31 2020-04-01T08:37:34Z artículo http://purl.org/coar/resource_type/c_6501 doi: 10.1186/s12862-019-1366-7 e-issn: 1471-2148 BMC Evolutionary Biology 19: 39 (2019) http://hdl.handle.net/10261/206087 10.1186/s12862-019-1366-7 http://dx.doi.org/10.13039/501100003329 http://dx.doi.org/10.13039/501100011033 http://dx.doi.org/10.13039/501100003176 http://dx.doi.org/10.13039/501100002809 30704392 #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/BFU2016-77961-P info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/MDM-2014-0370 Publisher's version http://doi.org/10.1186/s12862-019-1366-7 Sí open BioMed Central |
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Taste perception Biotransformations Cytochrome P450 Natural selection CYP3A4 CYP3A43 CYP27A1 Taste perception Biotransformations Cytochrome P450 Natural selection CYP3A4 CYP3A43 CYP27A1 |
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Taste perception Biotransformations Cytochrome P450 Natural selection CYP3A4 CYP3A43 CYP27A1 Taste perception Biotransformations Cytochrome P450 Natural selection CYP3A4 CYP3A43 CYP27A1 Dobon, Begoña Rossell, Carla Walsh, Sandra Bertranpetit, Jaume Is there adaptation in the human genome for taste perception and phase i biotransformation? |
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[Background] During the modern human expansion, new environmental pressures may have driven adaptation, especially in genes related to the perception of ingested substances and their detoxification. Consequently, positive (adaptive) selection may have occurred in genes related to taste, and in those related to the CYP450 system due to its role in biotransformation of potentially toxic compounds. A total of 91 genes (taste receptors and CYP450 superfamily) have been studied using Hierarchical Boosting, a powerful combination of different selection tests, to detect signatures of recent positive selection in three continental human populations: Northern Europeans (CEU), East Asians (CHB) and Africans (YRI). Analyses have been refined with selection analyses of the 26 populations of 1000 Genomes Project Phase 3. |
author2 |
Agencia Estatal de Investigación (España) |
author_facet |
Agencia Estatal de Investigación (España) Dobon, Begoña Rossell, Carla Walsh, Sandra Bertranpetit, Jaume |
format |
artículo |
topic_facet |
Taste perception Biotransformations Cytochrome P450 Natural selection CYP3A4 CYP3A43 CYP27A1 |
author |
Dobon, Begoña Rossell, Carla Walsh, Sandra Bertranpetit, Jaume |
author_sort |
Dobon, Begoña |
title |
Is there adaptation in the human genome for taste perception and phase i biotransformation? |
title_short |
Is there adaptation in the human genome for taste perception and phase i biotransformation? |
title_full |
Is there adaptation in the human genome for taste perception and phase i biotransformation? |
title_fullStr |
Is there adaptation in the human genome for taste perception and phase i biotransformation? |
title_full_unstemmed |
Is there adaptation in the human genome for taste perception and phase i biotransformation? |
title_sort |
is there adaptation in the human genome for taste perception and phase i biotransformation? |
publisher |
BioMed Central |
publishDate |
2019-01-31 |
url |
http://hdl.handle.net/10261/206087 http://dx.doi.org/10.13039/501100003329 http://dx.doi.org/10.13039/501100011033 http://dx.doi.org/10.13039/501100003176 http://dx.doi.org/10.13039/501100002809 |
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