MC64: A web platform to test bioinformatics algorithms in a many-core architecture
Editors: Miguel P. Rocha, Juan Manuel Corchado Rodríguez, Florentino Fdez Riverola, Alfonso Valencia.
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Springer Nature
2011
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| Online Access: | http://hdl.handle.net/10261/188093 http://dx.doi.org/10.13039/501100004837 http://dx.doi.org/10.13039/501100011011 |
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dig-ias-es-10261-1880932019-09-27T10:32:25Z MC64: A web platform to test bioinformatics algorithms in a many-core architecture Esteban, Francisco J. Díaz, David Hernández Molina, Pilar Caballero, Juan Antonio Dorado, Gabriel Gálvez, Sergio Ministerio de Ciencia e Innovación (España) Junta de Andalucía Universidad de Córdoba (España) Editors: Miguel P. Rocha, Juan Manuel Corchado Rodríguez, Florentino Fdez Riverola, Alfonso Valencia. ew analytical methodologies, like the so-called "next-generation sequencing" (NGS), allow the sequencing of full genomes with high speed and reduced price. Yet, such technologies generate huge amounts of data that demand large raw computational power. Many-core technologies can be exploited to overcome the involved bioinformatics bottleneck. Indeed, such hardware is currently in active development. We have developed parallel bioinformatics algorithms for many-core microprocessors containing 64 cores each. Thus, the MC64 web platform allows executing high-performance alignments (Needleman-Wunsch, Smith-Waterman and ClustalW) of long sequences. The MC64 platform can be accessed via web browsers, allowing easy resource integration into third-party tools. Furthermore, the results obtained from the MC64 include time-performance statistics that can be compared with other platforms. This work was supported by “Ministerio de Ciencia e Innovación” [BIO2009-07443-E and AGL2010-17316]; “Consejería de Agricultura y Pesca” of “Junta de Andalucía” [041/C/2007 & 75/C/2009]; “Grupo PAI” [AGR-248]; and “Universidad de Córdoba” [“Ayuda a Grupos”], Spain. Peer reviewed 2019-08-13T06:35:44Z 2019-08-13T06:35:44Z 2011 capítulo de libro http://purl.org/coar/resource_type/c_3248 5th International Conference on Practical Applications of Computational Biology & Bioinformatics: 9-16 (2011) 978-3-642-19914-1 (online) 1867-5662 http://hdl.handle.net/10261/188093 http://dx.doi.org/10.13039/501100004837 http://dx.doi.org/10.13039/501100011011 en Advances in Intelligent and Soft Computing 93 Sí none Springer Nature |
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Editors: Miguel P. Rocha, Juan Manuel Corchado Rodríguez, Florentino Fdez Riverola, Alfonso Valencia. |
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Ministerio de Ciencia e Innovación (España) |
| author_facet |
Ministerio de Ciencia e Innovación (España) Esteban, Francisco J. Díaz, David Hernández Molina, Pilar Caballero, Juan Antonio Dorado, Gabriel Gálvez, Sergio |
| format |
capítulo de libro |
| author |
Esteban, Francisco J. Díaz, David Hernández Molina, Pilar Caballero, Juan Antonio Dorado, Gabriel Gálvez, Sergio |
| spellingShingle |
Esteban, Francisco J. Díaz, David Hernández Molina, Pilar Caballero, Juan Antonio Dorado, Gabriel Gálvez, Sergio MC64: A web platform to test bioinformatics algorithms in a many-core architecture |
| author_sort |
Esteban, Francisco J. |
| title |
MC64: A web platform to test bioinformatics algorithms in a many-core architecture |
| title_short |
MC64: A web platform to test bioinformatics algorithms in a many-core architecture |
| title_full |
MC64: A web platform to test bioinformatics algorithms in a many-core architecture |
| title_fullStr |
MC64: A web platform to test bioinformatics algorithms in a many-core architecture |
| title_full_unstemmed |
MC64: A web platform to test bioinformatics algorithms in a many-core architecture |
| title_sort |
mc64: a web platform to test bioinformatics algorithms in a many-core architecture |
| publisher |
Springer Nature |
| publishDate |
2011 |
| url |
http://hdl.handle.net/10261/188093 http://dx.doi.org/10.13039/501100004837 http://dx.doi.org/10.13039/501100011011 |
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