Transcriptome analysis of cell wall and NAC domain transcription factor genes during Elaeis guineensis fruit ripening: Evidence for widespread conservation within monocot and eudicot lineages

The oil palm (Elaeis guineensis), a monocotyledonous species in the family Arecaceae, has an extraordinarily oil rich fleshy mesocarp, and presents an original model to examine the ripening processes and regulation in this particular monocot fruit. Histochemical analysis and cell parameter measurements revealed cell wall and middle lamella expansion and degradation during ripening and in response to ethylene. Cell wall related transcript profiles suggest a transition from synthesis to degradation is under transcriptional control during ripening, in particular a switch from cellulose, hemicellulose, and pectin synthesis to hydrolysis and degradation. The data provide evidence for the transcriptional activation of expansin, polygalacturonase, mannosidase, beta-galactosidase, and xyloglucan endotransglucosylase/hydrolase proteins in the ripening oil palm mesocarp, suggesting widespread conservation of these activities during ripening for monocotyledonous and eudicotyledonous fruit types. Profiling of the most abundant oil palm polygalacturonase (EgPG4) and 1-aminocyclopropane-1-carboxylic acid oxidase (ACO) transcripts during development and in response to ethylene demonstrated both are sensitive markers of ethylene production and inducible gene expression during mesocarp ripening, and provide evidence for a conserved regulatory module between ethylene and cell wall pectin degradation. A comprehensive analysis of NAC transcription factors confirmed at least 10 transcripts from diverse NAC domain clades are expressed in the mesocarp during ripening, four of which are induced by ethylene treatment, with the two most inducible (EgNAC6 and EgNAC7) phylogenetically similar to the tomato NAC-NOR master-ripening regulator. Overall, the results provide evidence that despite the phylogenetic distance of the oil palm within the family Arecaceae from the most extensively studied monocot banana fruit, it appears ripening of divergent monocot and eudicot fruit lineages are regulated by evolutionarily conserved molecular physiological processes.

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Main Authors: Tranbarger, Timothy John, Fooyontphanich, Kim, Roongsattham, Peerapat, Pizot, Maxime, Collin, Myriam, Jantasuriyarat, Chatchawan, Suraningpong, Potjamarn, Tragoonrung, Somvong, Dussert, Stéphane, Verdeil, Jean-Luc, Morcillo, Fabienne
Format: article biblioteca
Language:eng
Subjects:F30 - Génétique et amélioration des plantes, F60 - Physiologie et biochimie végétale, Elaeis guineensis, gène, fruit (botanique), maturation, paroi cellulaire, biologie moléculaire, expression des gènes, mésocarpe, http://aims.fao.org/aos/agrovoc/c_2509, http://aims.fao.org/aos/agrovoc/c_3214, http://aims.fao.org/aos/agrovoc/c_3119, http://aims.fao.org/aos/agrovoc/c_4655, http://aims.fao.org/aos/agrovoc/c_1415, http://aims.fao.org/aos/agrovoc/c_4891, http://aims.fao.org/aos/agrovoc/c_27527, http://aims.fao.org/aos/agrovoc/c_27979,
Online Access:http://agritrop.cirad.fr/586597/
http://agritrop.cirad.fr/586597/1/Tranbarger%20et%20al%202017%20Frontiers%20in%20plant%20science%20%28NAC%29.pdf
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id dig-cirad-fr-586597
record_format koha
institution CIRAD FR
collection DSpace
country Francia
countrycode FR
component Bibliográfico
access En linea
databasecode dig-cirad-fr
tag biblioteca
region Europa del Oeste
libraryname Biblioteca del CIRAD Francia
language eng
topic F30 - Génétique et amélioration des plantes
F60 - Physiologie et biochimie végétale
Elaeis guineensis
gène
fruit (botanique)
maturation
paroi cellulaire
biologie moléculaire
expression des gènes
mésocarpe
http://aims.fao.org/aos/agrovoc/c_2509
http://aims.fao.org/aos/agrovoc/c_3214
http://aims.fao.org/aos/agrovoc/c_3119
http://aims.fao.org/aos/agrovoc/c_4655
http://aims.fao.org/aos/agrovoc/c_1415
http://aims.fao.org/aos/agrovoc/c_4891
http://aims.fao.org/aos/agrovoc/c_27527
http://aims.fao.org/aos/agrovoc/c_27979
F30 - Génétique et amélioration des plantes
F60 - Physiologie et biochimie végétale
Elaeis guineensis
gène
fruit (botanique)
maturation
paroi cellulaire
biologie moléculaire
expression des gènes
mésocarpe
http://aims.fao.org/aos/agrovoc/c_2509
http://aims.fao.org/aos/agrovoc/c_3214
http://aims.fao.org/aos/agrovoc/c_3119
http://aims.fao.org/aos/agrovoc/c_4655
http://aims.fao.org/aos/agrovoc/c_1415
http://aims.fao.org/aos/agrovoc/c_4891
http://aims.fao.org/aos/agrovoc/c_27527
http://aims.fao.org/aos/agrovoc/c_27979
spellingShingle F30 - Génétique et amélioration des plantes
F60 - Physiologie et biochimie végétale
Elaeis guineensis
gène
fruit (botanique)
maturation
paroi cellulaire
biologie moléculaire
expression des gènes
mésocarpe
http://aims.fao.org/aos/agrovoc/c_2509
http://aims.fao.org/aos/agrovoc/c_3214
http://aims.fao.org/aos/agrovoc/c_3119
http://aims.fao.org/aos/agrovoc/c_4655
http://aims.fao.org/aos/agrovoc/c_1415
http://aims.fao.org/aos/agrovoc/c_4891
http://aims.fao.org/aos/agrovoc/c_27527
http://aims.fao.org/aos/agrovoc/c_27979
F30 - Génétique et amélioration des plantes
F60 - Physiologie et biochimie végétale
Elaeis guineensis
gène
fruit (botanique)
maturation
paroi cellulaire
biologie moléculaire
expression des gènes
mésocarpe
http://aims.fao.org/aos/agrovoc/c_2509
http://aims.fao.org/aos/agrovoc/c_3214
http://aims.fao.org/aos/agrovoc/c_3119
http://aims.fao.org/aos/agrovoc/c_4655
http://aims.fao.org/aos/agrovoc/c_1415
http://aims.fao.org/aos/agrovoc/c_4891
http://aims.fao.org/aos/agrovoc/c_27527
http://aims.fao.org/aos/agrovoc/c_27979
Tranbarger, Timothy John
Fooyontphanich, Kim
Roongsattham, Peerapat
Pizot, Maxime
Collin, Myriam
Jantasuriyarat, Chatchawan
Suraningpong, Potjamarn
Tragoonrung, Somvong
Dussert, Stéphane
Verdeil, Jean-Luc
Morcillo, Fabienne
Transcriptome analysis of cell wall and NAC domain transcription factor genes during Elaeis guineensis fruit ripening: Evidence for widespread conservation within monocot and eudicot lineages
description The oil palm (Elaeis guineensis), a monocotyledonous species in the family Arecaceae, has an extraordinarily oil rich fleshy mesocarp, and presents an original model to examine the ripening processes and regulation in this particular monocot fruit. Histochemical analysis and cell parameter measurements revealed cell wall and middle lamella expansion and degradation during ripening and in response to ethylene. Cell wall related transcript profiles suggest a transition from synthesis to degradation is under transcriptional control during ripening, in particular a switch from cellulose, hemicellulose, and pectin synthesis to hydrolysis and degradation. The data provide evidence for the transcriptional activation of expansin, polygalacturonase, mannosidase, beta-galactosidase, and xyloglucan endotransglucosylase/hydrolase proteins in the ripening oil palm mesocarp, suggesting widespread conservation of these activities during ripening for monocotyledonous and eudicotyledonous fruit types. Profiling of the most abundant oil palm polygalacturonase (EgPG4) and 1-aminocyclopropane-1-carboxylic acid oxidase (ACO) transcripts during development and in response to ethylene demonstrated both are sensitive markers of ethylene production and inducible gene expression during mesocarp ripening, and provide evidence for a conserved regulatory module between ethylene and cell wall pectin degradation. A comprehensive analysis of NAC transcription factors confirmed at least 10 transcripts from diverse NAC domain clades are expressed in the mesocarp during ripening, four of which are induced by ethylene treatment, with the two most inducible (EgNAC6 and EgNAC7) phylogenetically similar to the tomato NAC-NOR master-ripening regulator. Overall, the results provide evidence that despite the phylogenetic distance of the oil palm within the family Arecaceae from the most extensively studied monocot banana fruit, it appears ripening of divergent monocot and eudicot fruit lineages are regulated by evolutionarily conserved molecular physiological processes.
format article
topic_facet F30 - Génétique et amélioration des plantes
F60 - Physiologie et biochimie végétale
Elaeis guineensis
gène
fruit (botanique)
maturation
paroi cellulaire
biologie moléculaire
expression des gènes
mésocarpe
http://aims.fao.org/aos/agrovoc/c_2509
http://aims.fao.org/aos/agrovoc/c_3214
http://aims.fao.org/aos/agrovoc/c_3119
http://aims.fao.org/aos/agrovoc/c_4655
http://aims.fao.org/aos/agrovoc/c_1415
http://aims.fao.org/aos/agrovoc/c_4891
http://aims.fao.org/aos/agrovoc/c_27527
http://aims.fao.org/aos/agrovoc/c_27979
author Tranbarger, Timothy John
Fooyontphanich, Kim
Roongsattham, Peerapat
Pizot, Maxime
Collin, Myriam
Jantasuriyarat, Chatchawan
Suraningpong, Potjamarn
Tragoonrung, Somvong
Dussert, Stéphane
Verdeil, Jean-Luc
Morcillo, Fabienne
author_facet Tranbarger, Timothy John
Fooyontphanich, Kim
Roongsattham, Peerapat
Pizot, Maxime
Collin, Myriam
Jantasuriyarat, Chatchawan
Suraningpong, Potjamarn
Tragoonrung, Somvong
Dussert, Stéphane
Verdeil, Jean-Luc
Morcillo, Fabienne
author_sort Tranbarger, Timothy John
title Transcriptome analysis of cell wall and NAC domain transcription factor genes during Elaeis guineensis fruit ripening: Evidence for widespread conservation within monocot and eudicot lineages
title_short Transcriptome analysis of cell wall and NAC domain transcription factor genes during Elaeis guineensis fruit ripening: Evidence for widespread conservation within monocot and eudicot lineages
title_full Transcriptome analysis of cell wall and NAC domain transcription factor genes during Elaeis guineensis fruit ripening: Evidence for widespread conservation within monocot and eudicot lineages
title_fullStr Transcriptome analysis of cell wall and NAC domain transcription factor genes during Elaeis guineensis fruit ripening: Evidence for widespread conservation within monocot and eudicot lineages
title_full_unstemmed Transcriptome analysis of cell wall and NAC domain transcription factor genes during Elaeis guineensis fruit ripening: Evidence for widespread conservation within monocot and eudicot lineages
title_sort transcriptome analysis of cell wall and nac domain transcription factor genes during elaeis guineensis fruit ripening: evidence for widespread conservation within monocot and eudicot lineages
url http://agritrop.cirad.fr/586597/
http://agritrop.cirad.fr/586597/1/Tranbarger%20et%20al%202017%20Frontiers%20in%20plant%20science%20%28NAC%29.pdf
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spelling dig-cirad-fr-5865972024-01-29T00:44:23Z http://agritrop.cirad.fr/586597/ http://agritrop.cirad.fr/586597/ Transcriptome analysis of cell wall and NAC domain transcription factor genes during Elaeis guineensis fruit ripening: Evidence for widespread conservation within monocot and eudicot lineages. Tranbarger Timothy John, Fooyontphanich Kim, Roongsattham Peerapat, Pizot Maxime, Collin Myriam, Jantasuriyarat Chatchawan, Suraningpong Potjamarn, Tragoonrung Somvong, Dussert Stéphane, Verdeil Jean-Luc, Morcillo Fabienne. 2017. Frontiers in Plant Science, 8:603, 13 p.https://doi.org/10.3389/fpls.2017.00603 <https://doi.org/10.3389/fpls.2017.00603> Transcriptome analysis of cell wall and NAC domain transcription factor genes during Elaeis guineensis fruit ripening: Evidence for widespread conservation within monocot and eudicot lineages Tranbarger, Timothy John Fooyontphanich, Kim Roongsattham, Peerapat Pizot, Maxime Collin, Myriam Jantasuriyarat, Chatchawan Suraningpong, Potjamarn Tragoonrung, Somvong Dussert, Stéphane Verdeil, Jean-Luc Morcillo, Fabienne eng 2017 Frontiers in Plant Science F30 - Génétique et amélioration des plantes F60 - Physiologie et biochimie végétale Elaeis guineensis gène fruit (botanique) maturation paroi cellulaire biologie moléculaire expression des gènes mésocarpe http://aims.fao.org/aos/agrovoc/c_2509 http://aims.fao.org/aos/agrovoc/c_3214 http://aims.fao.org/aos/agrovoc/c_3119 http://aims.fao.org/aos/agrovoc/c_4655 http://aims.fao.org/aos/agrovoc/c_1415 http://aims.fao.org/aos/agrovoc/c_4891 http://aims.fao.org/aos/agrovoc/c_27527 http://aims.fao.org/aos/agrovoc/c_27979 The oil palm (Elaeis guineensis), a monocotyledonous species in the family Arecaceae, has an extraordinarily oil rich fleshy mesocarp, and presents an original model to examine the ripening processes and regulation in this particular monocot fruit. Histochemical analysis and cell parameter measurements revealed cell wall and middle lamella expansion and degradation during ripening and in response to ethylene. Cell wall related transcript profiles suggest a transition from synthesis to degradation is under transcriptional control during ripening, in particular a switch from cellulose, hemicellulose, and pectin synthesis to hydrolysis and degradation. The data provide evidence for the transcriptional activation of expansin, polygalacturonase, mannosidase, beta-galactosidase, and xyloglucan endotransglucosylase/hydrolase proteins in the ripening oil palm mesocarp, suggesting widespread conservation of these activities during ripening for monocotyledonous and eudicotyledonous fruit types. Profiling of the most abundant oil palm polygalacturonase (EgPG4) and 1-aminocyclopropane-1-carboxylic acid oxidase (ACO) transcripts during development and in response to ethylene demonstrated both are sensitive markers of ethylene production and inducible gene expression during mesocarp ripening, and provide evidence for a conserved regulatory module between ethylene and cell wall pectin degradation. A comprehensive analysis of NAC transcription factors confirmed at least 10 transcripts from diverse NAC domain clades are expressed in the mesocarp during ripening, four of which are induced by ethylene treatment, with the two most inducible (EgNAC6 and EgNAC7) phylogenetically similar to the tomato NAC-NOR master-ripening regulator. Overall, the results provide evidence that despite the phylogenetic distance of the oil palm within the family Arecaceae from the most extensively studied monocot banana fruit, it appears ripening of divergent monocot and eudicot fruit lineages are regulated by evolutionarily conserved molecular physiological processes. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/586597/1/Tranbarger%20et%20al%202017%20Frontiers%20in%20plant%20science%20%28NAC%29.pdf text Cirad license info:eu-repo/semantics/openAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.3389/fpls.2017.00603 10.3389/fpls.2017.00603 info:eu-repo/semantics/altIdentifier/doi/10.3389/fpls.2017.00603 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.3389/fpls.2017.00603