The classification and nomenclature of endogenous viruses of the family Caulimoviridae
Endogenous members of the family Caulimoviridae have now been found in the genomes of many plant species. Although these sequences are usually fragmented and rearranged and show varying degrees of decay, the genomes of the ancestral viruses can often be reassembled in silico, allowing classification within the existing viral taxonomic framework. In this paper, we describe analyses of endogenous members of the family Caulimoviridae in the genomes of Oryza sativa, Nicotiana tabacum and Solanum spp. and on the basis of phylogeny, genome organization and genetic distance within the pol gene, propose two new virus genera called Orendovirus and Solendovirus. A system of nomenclature for endogenous virus sequences in plants is also proposed.
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Language: | eng |
Subjects: | H20 - Maladies des plantes, Oryza sativa, Nicotiana tabacum, Solanum, Caulimovirus, identification, virus, génome, phylogénie, http://aims.fao.org/aos/agrovoc/c_5438, http://aims.fao.org/aos/agrovoc/c_5177, http://aims.fao.org/aos/agrovoc/c_7216, http://aims.fao.org/aos/agrovoc/c_32853, http://aims.fao.org/aos/agrovoc/c_3791, http://aims.fao.org/aos/agrovoc/c_8262, http://aims.fao.org/aos/agrovoc/c_3224, http://aims.fao.org/aos/agrovoc/c_13325, |
Online Access: | http://agritrop.cirad.fr/552924/ http://agritrop.cirad.fr/552924/1/document_552924.pdf |
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dig-cirad-fr-5529242024-01-28T17:56:51Z http://agritrop.cirad.fr/552924/ http://agritrop.cirad.fr/552924/ The classification and nomenclature of endogenous viruses of the family Caulimoviridae. Geering Andrew D., Scharaschkin Tanya, Teycheney Pierre-Yves. 2010. Archives of Virology, 155 (1) : 123-131.https://doi.org/10.1007/s00705-009-0488-4 <https://doi.org/10.1007/s00705-009-0488-4> The classification and nomenclature of endogenous viruses of the family Caulimoviridae Geering, Andrew D. Scharaschkin, Tanya Teycheney, Pierre-Yves eng 2010 Archives of Virology H20 - Maladies des plantes Oryza sativa Nicotiana tabacum Solanum Caulimovirus identification virus génome phylogénie http://aims.fao.org/aos/agrovoc/c_5438 http://aims.fao.org/aos/agrovoc/c_5177 http://aims.fao.org/aos/agrovoc/c_7216 http://aims.fao.org/aos/agrovoc/c_32853 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_8262 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_13325 Endogenous members of the family Caulimoviridae have now been found in the genomes of many plant species. Although these sequences are usually fragmented and rearranged and show varying degrees of decay, the genomes of the ancestral viruses can often be reassembled in silico, allowing classification within the existing viral taxonomic framework. In this paper, we describe analyses of endogenous members of the family Caulimoviridae in the genomes of Oryza sativa, Nicotiana tabacum and Solanum spp. and on the basis of phylogeny, genome organization and genetic distance within the pol gene, propose two new virus genera called Orendovirus and Solendovirus. A system of nomenclature for endogenous virus sequences in plants is also proposed. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/552924/1/document_552924.pdf application/pdf Cirad license info:eu-repo/semantics/restrictedAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.1007/s00705-009-0488-4 10.1007/s00705-009-0488-4 info:eu-repo/semantics/altIdentifier/doi/10.1007/s00705-009-0488-4 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1007/s00705-009-0488-4 |
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H20 - Maladies des plantes Oryza sativa Nicotiana tabacum Solanum Caulimovirus identification virus génome phylogénie http://aims.fao.org/aos/agrovoc/c_5438 http://aims.fao.org/aos/agrovoc/c_5177 http://aims.fao.org/aos/agrovoc/c_7216 http://aims.fao.org/aos/agrovoc/c_32853 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_8262 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_13325 H20 - Maladies des plantes Oryza sativa Nicotiana tabacum Solanum Caulimovirus identification virus génome phylogénie http://aims.fao.org/aos/agrovoc/c_5438 http://aims.fao.org/aos/agrovoc/c_5177 http://aims.fao.org/aos/agrovoc/c_7216 http://aims.fao.org/aos/agrovoc/c_32853 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_8262 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_13325 |
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H20 - Maladies des plantes Oryza sativa Nicotiana tabacum Solanum Caulimovirus identification virus génome phylogénie http://aims.fao.org/aos/agrovoc/c_5438 http://aims.fao.org/aos/agrovoc/c_5177 http://aims.fao.org/aos/agrovoc/c_7216 http://aims.fao.org/aos/agrovoc/c_32853 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_8262 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_13325 H20 - Maladies des plantes Oryza sativa Nicotiana tabacum Solanum Caulimovirus identification virus génome phylogénie http://aims.fao.org/aos/agrovoc/c_5438 http://aims.fao.org/aos/agrovoc/c_5177 http://aims.fao.org/aos/agrovoc/c_7216 http://aims.fao.org/aos/agrovoc/c_32853 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_8262 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_13325 Geering, Andrew D. Scharaschkin, Tanya Teycheney, Pierre-Yves The classification and nomenclature of endogenous viruses of the family Caulimoviridae |
description |
Endogenous members of the family Caulimoviridae have now been found in the genomes of many plant species. Although these sequences are usually fragmented and rearranged and show varying degrees of decay, the genomes of the ancestral viruses can often be reassembled in silico, allowing classification within the existing viral taxonomic framework. In this paper, we describe analyses of endogenous members of the family Caulimoviridae in the genomes of Oryza sativa, Nicotiana tabacum and Solanum spp. and on the basis of phylogeny, genome organization and genetic distance within the pol gene, propose two new virus genera called Orendovirus and Solendovirus. A system of nomenclature for endogenous virus sequences in plants is also proposed. |
format |
article |
topic_facet |
H20 - Maladies des plantes Oryza sativa Nicotiana tabacum Solanum Caulimovirus identification virus génome phylogénie http://aims.fao.org/aos/agrovoc/c_5438 http://aims.fao.org/aos/agrovoc/c_5177 http://aims.fao.org/aos/agrovoc/c_7216 http://aims.fao.org/aos/agrovoc/c_32853 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_8262 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_13325 |
author |
Geering, Andrew D. Scharaschkin, Tanya Teycheney, Pierre-Yves |
author_facet |
Geering, Andrew D. Scharaschkin, Tanya Teycheney, Pierre-Yves |
author_sort |
Geering, Andrew D. |
title |
The classification and nomenclature of endogenous viruses of the family Caulimoviridae |
title_short |
The classification and nomenclature of endogenous viruses of the family Caulimoviridae |
title_full |
The classification and nomenclature of endogenous viruses of the family Caulimoviridae |
title_fullStr |
The classification and nomenclature of endogenous viruses of the family Caulimoviridae |
title_full_unstemmed |
The classification and nomenclature of endogenous viruses of the family Caulimoviridae |
title_sort |
classification and nomenclature of endogenous viruses of the family caulimoviridae |
url |
http://agritrop.cirad.fr/552924/ http://agritrop.cirad.fr/552924/1/document_552924.pdf |
work_keys_str_mv |
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_version_ |
1792497459168018432 |