Aerial high‐throughput phenotyping enables indirect selection for grain yield at the early generation, seed‐limited stages in breeding programs

Breeding programs for wheat (Triticum aestivum L.) and other crops require one or more generations of seed increase before replicated trials can be sown to assess yield. Extensive phenotyping at this stage is challenging because of the small sizes of plots and large numbers of lines under evaluation, and therefore, breeders typically rely on visual selection to promote lines to yield evaluation. Aerial high‐throughput phenotyping (HTP) enables the rapid acquisition of traits that may be useful for selection among early generation lines. With the objective of assessing the potential for aerial measurements recorded on seed increase plots to improve indirect selection for grain yield (GY), two sets of 1,008 early generation bread wheat breeding lines were sown both as replicated yield trials (YTs) and as small, unreplicated plots (SPs) at the International Maize and Wheat Improvement Center during two breeding cycles. Normalized difference vegetation indices (NDVI) collected with an unmanned aerial vehicle (UAV) in the SPs were observed to be heritable and moderately correlated with GY assessed in YTs. Furthermore, NDVI was more predictive of GY than univariate genomic selection (GS), with still higher overall predictive abilities from multitrait approaches. A related experiment showed that selection based on NDVI would have outperformed visual selection, though this approach would have driven a directional response in phenology because of confounding between phenology, NDVI, and GY. A restricted selection index was proposed to address this issue. These results provide a promising outlook for the use of aerial HTP to improve selection at the early generation, seed‐limited stages of breeding programs.

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Main Authors: Krause, M., Mondal, S., Crossa, J., Singh, R.P., Pinto Espinosa, F., Haghighattalab, A., Shrestha, S., Rutkoski, J., Gore, M.A., Sorrells, M.E., Poland, J.A.
Format: Article biblioteca
Language:English
Published: Crop Science Society of America (CSSA) 2020
Subjects:AGRICULTURAL SCIENCES AND BIOTECHNOLOGY, PLANT BREEDING, SELECTION, SEED, PHENOTYPES, WHEAT,
Online Access:https://hdl.handle.net/10883/21031
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spelling dig-cimmyt-10883-210312023-07-11T16:30:04Z Aerial high‐throughput phenotyping enables indirect selection for grain yield at the early generation, seed‐limited stages in breeding programs Krause, M. Mondal, S. Crossa, J. Singh, R.P. Pinto Espinosa, F. Haghighattalab, A. Shrestha, S. Rutkoski, J. Gore, M.A. Sorrells, M.E. Poland, J.A. AGRICULTURAL SCIENCES AND BIOTECHNOLOGY PLANT BREEDING SELECTION SEED PHENOTYPES WHEAT Breeding programs for wheat (Triticum aestivum L.) and other crops require one or more generations of seed increase before replicated trials can be sown to assess yield. Extensive phenotyping at this stage is challenging because of the small sizes of plots and large numbers of lines under evaluation, and therefore, breeders typically rely on visual selection to promote lines to yield evaluation. Aerial high‐throughput phenotyping (HTP) enables the rapid acquisition of traits that may be useful for selection among early generation lines. With the objective of assessing the potential for aerial measurements recorded on seed increase plots to improve indirect selection for grain yield (GY), two sets of 1,008 early generation bread wheat breeding lines were sown both as replicated yield trials (YTs) and as small, unreplicated plots (SPs) at the International Maize and Wheat Improvement Center during two breeding cycles. Normalized difference vegetation indices (NDVI) collected with an unmanned aerial vehicle (UAV) in the SPs were observed to be heritable and moderately correlated with GY assessed in YTs. Furthermore, NDVI was more predictive of GY than univariate genomic selection (GS), with still higher overall predictive abilities from multitrait approaches. A related experiment showed that selection based on NDVI would have outperformed visual selection, though this approach would have driven a directional response in phenology because of confounding between phenology, NDVI, and GY. A restricted selection index was proposed to address this issue. These results provide a promising outlook for the use of aerial HTP to improve selection at the early generation, seed‐limited stages of breeding programs. 3096-3114 2020-11-28T01:20:17Z 2020-11-28T01:20:17Z 2020 Article Published Version https://hdl.handle.net/10883/21031 10.1002/csc2.20259 English http://hdl.handle.net/11529/10548379 CIMMYT manages Intellectual Assets as International Public Goods. The user is free to download, print, store and share this work. In case you want to translate or create any other derivative work and share or distribute such translation/derivative work, please contact CIMMYT-Knowledge-Center@cgiar.org indicating the work you want to use and the kind of use you intend; CIMMYT will contact you with the suitable license for that purpose Open Access USA Crop Science Society of America (CSSA) 6 60 1435-0653 Crop Science
institution CIMMYT
collection DSpace
country México
countrycode MX
component Bibliográfico
access En linea
databasecode dig-cimmyt
tag biblioteca
region America del Norte
libraryname CIMMYT Library
language English
topic AGRICULTURAL SCIENCES AND BIOTECHNOLOGY
PLANT BREEDING
SELECTION
SEED
PHENOTYPES
WHEAT
AGRICULTURAL SCIENCES AND BIOTECHNOLOGY
PLANT BREEDING
SELECTION
SEED
PHENOTYPES
WHEAT
spellingShingle AGRICULTURAL SCIENCES AND BIOTECHNOLOGY
PLANT BREEDING
SELECTION
SEED
PHENOTYPES
WHEAT
AGRICULTURAL SCIENCES AND BIOTECHNOLOGY
PLANT BREEDING
SELECTION
SEED
PHENOTYPES
WHEAT
Krause, M.
Mondal, S.
Crossa, J.
Singh, R.P.
Pinto Espinosa, F.
Haghighattalab, A.
Shrestha, S.
Rutkoski, J.
Gore, M.A.
Sorrells, M.E.
Poland, J.A.
Aerial high‐throughput phenotyping enables indirect selection for grain yield at the early generation, seed‐limited stages in breeding programs
description Breeding programs for wheat (Triticum aestivum L.) and other crops require one or more generations of seed increase before replicated trials can be sown to assess yield. Extensive phenotyping at this stage is challenging because of the small sizes of plots and large numbers of lines under evaluation, and therefore, breeders typically rely on visual selection to promote lines to yield evaluation. Aerial high‐throughput phenotyping (HTP) enables the rapid acquisition of traits that may be useful for selection among early generation lines. With the objective of assessing the potential for aerial measurements recorded on seed increase plots to improve indirect selection for grain yield (GY), two sets of 1,008 early generation bread wheat breeding lines were sown both as replicated yield trials (YTs) and as small, unreplicated plots (SPs) at the International Maize and Wheat Improvement Center during two breeding cycles. Normalized difference vegetation indices (NDVI) collected with an unmanned aerial vehicle (UAV) in the SPs were observed to be heritable and moderately correlated with GY assessed in YTs. Furthermore, NDVI was more predictive of GY than univariate genomic selection (GS), with still higher overall predictive abilities from multitrait approaches. A related experiment showed that selection based on NDVI would have outperformed visual selection, though this approach would have driven a directional response in phenology because of confounding between phenology, NDVI, and GY. A restricted selection index was proposed to address this issue. These results provide a promising outlook for the use of aerial HTP to improve selection at the early generation, seed‐limited stages of breeding programs.
format Article
topic_facet AGRICULTURAL SCIENCES AND BIOTECHNOLOGY
PLANT BREEDING
SELECTION
SEED
PHENOTYPES
WHEAT
author Krause, M.
Mondal, S.
Crossa, J.
Singh, R.P.
Pinto Espinosa, F.
Haghighattalab, A.
Shrestha, S.
Rutkoski, J.
Gore, M.A.
Sorrells, M.E.
Poland, J.A.
author_facet Krause, M.
Mondal, S.
Crossa, J.
Singh, R.P.
Pinto Espinosa, F.
Haghighattalab, A.
Shrestha, S.
Rutkoski, J.
Gore, M.A.
Sorrells, M.E.
Poland, J.A.
author_sort Krause, M.
title Aerial high‐throughput phenotyping enables indirect selection for grain yield at the early generation, seed‐limited stages in breeding programs
title_short Aerial high‐throughput phenotyping enables indirect selection for grain yield at the early generation, seed‐limited stages in breeding programs
title_full Aerial high‐throughput phenotyping enables indirect selection for grain yield at the early generation, seed‐limited stages in breeding programs
title_fullStr Aerial high‐throughput phenotyping enables indirect selection for grain yield at the early generation, seed‐limited stages in breeding programs
title_full_unstemmed Aerial high‐throughput phenotyping enables indirect selection for grain yield at the early generation, seed‐limited stages in breeding programs
title_sort aerial high‐throughput phenotyping enables indirect selection for grain yield at the early generation, seed‐limited stages in breeding programs
publisher Crop Science Society of America (CSSA)
publishDate 2020
url https://hdl.handle.net/10883/21031
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