TropGene Sugarcane

The data come from the TropGeneDB CIRAD information system (https://tropgenedb.cirad.fr/tropgene/JSP/index.jsp). TropGeneDB contains data from studies on tropical and mediterranean plants for various kinds of topics such as marker, QTL, genotype, genetic, phenotype, cartography (genetic, physical and linkage disequilibrium maps), linkage disequilibrium, association and germplasm. The plants concerned are banana, breadfruit, citrus, cocoa, coconut palm, cotton, oil palm, rice, rubber, sorghum and sugarcane. The IS has a database per plant. The data were produced by CIRAD researchers or by CIRAD researchers and colleagues associated in research projects. The SUGARCANE data in this dataset produced between 1987 and 2008 were extracted from the TROPGENE_SUGARCANE database in tabulated text format files. There is a file for each type of data which name includes the data type. Each line of a file has several columns describing the study (title, description, year, country, place, contact) it belongs to. The tropgene_sugarcane_references.txt file contains the references of the scientific publications on these data. Files tropgene_sugarcane_images_markers_primerpairs.txt and tropgene_sugarcane_images_traits.txt contain the file names relative to some markers, primers or traits associated respectively to the study of genotypes and phenotypes. The images files are in the compressed file tropgene_sugarcane_images.tar.gz.

Bibliographic Details

Main Author:	Hamelin, Chantal
Format:	Phenotype data biblioteca
Published:	CIRAD Dataverse 2024
Subjects:	Agricultural Sciences, Sugarcane, Genetic Marker, QTL, Genotype, Germplasm, Association trait marker, Genetic maps, Linkage disequilibrium, Linkage disequilibrium map, Phenotype,
Online Access:	https://doi.org/10.18167/DVN1/TJZD3J
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