Replication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breeding
In plant breeding research, several statistical machine learning methods have been developed and studied for assessing the genomic prediction (GP) accuracy of unobserved phenotypes. To increase the GP accuracy of unobserved phenotypes while simultaneously accounting for the complexity of genotype × environment interaction (GE), deep learning (DL) neural networks have been developed.These analyses can potentially include phenomics data obtained through imaging. The two datasets included in this study contain phenomic, phenotypic, and genotypic data for a set of wheat materials. They have been used to compare a novel DL method with conventional GP models.The results of these analyses are reported in the accompanying journal article.
Main Authors: | , , , , , , , , , |
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Format: | Experimental data biblioteca |
Language: | English |
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CIMMYT Research Data & Software Repository Network
2023
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Subjects: | Agricultural Sciences, Plant Breeding, Grain yield, Thousand grain weight, Canopy normalized difference vegetation index, Agricultural research, Triticum aestivum, Wheat, |
Online Access: | https://hdl.handle.net/11529/10548885 |
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dat-cimmyt-11529105488852023-08-16T01:00:05ZReplication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breedinghttps://hdl.handle.net/11529/10548885Montesinos-López, AbelardoRivera Amado, Alma CarolinaPinto, FranciscoPiñera Chavez, Francisco JavierGonzalez, DavidReynolds, MatthewPérez-Rodríguez, PaulinoLi, HuihuiMontesinos-López, Osval A.Crossa, JoseCIMMYT Research Data & Software Repository NetworkIn plant breeding research, several statistical machine learning methods have been developed and studied for assessing the genomic prediction (GP) accuracy of unobserved phenotypes. To increase the GP accuracy of unobserved phenotypes while simultaneously accounting for the complexity of genotype × environment interaction (GE), deep learning (DL) neural networks have been developed.These analyses can potentially include phenomics data obtained through imaging. The two datasets included in this study contain phenomic, phenotypic, and genotypic data for a set of wheat materials. They have been used to compare a novel DL method with conventional GP models.The results of these analyses are reported in the accompanying journal article.Agricultural SciencesPlant BreedingGrain yieldThousand grain weightCanopy normalized difference vegetation indexAgricultural researchTriticum aestivumWheatEnglish2023Dreher, KateCGIAR Research Program on Wheat (WHEAT)Genetic Resources Program (GRP)Global Wheat Program (GWP)Bill and Melinda Gates Foundation (BMGF)United States Agency for International Development (USAID)Biometrics and Statistics Unit (BSU)CGIARAgricultural Agreement Research Fund (JA)Accelerating Genetic Gains in Maize and Wheat for Improved Livelihoods (AGG)Heat and Drought Wheat Improvement Consortium (HeDWIC)International Wheat Yield Partnership (IWYP)Foundation for Research Levy on Agricultural Products (FFL)Foreign, Commonwealth and Development Office (FCDO)Research Council of NorwayFoundation for Food and Agriculture ResearchExperimental dataPhenotypic dataGenotypic data |
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Centro Internacional de Mejoramiento de Maíz y Trigo |
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Agricultural Sciences Plant Breeding Grain yield Thousand grain weight Canopy normalized difference vegetation index Agricultural research Triticum aestivum Wheat Agricultural Sciences Plant Breeding Grain yield Thousand grain weight Canopy normalized difference vegetation index Agricultural research Triticum aestivum Wheat |
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Agricultural Sciences Plant Breeding Grain yield Thousand grain weight Canopy normalized difference vegetation index Agricultural research Triticum aestivum Wheat Agricultural Sciences Plant Breeding Grain yield Thousand grain weight Canopy normalized difference vegetation index Agricultural research Triticum aestivum Wheat Montesinos-López, Abelardo Rivera Amado, Alma Carolina Pinto, Francisco Piñera Chavez, Francisco Javier Gonzalez, David Reynolds, Matthew Pérez-Rodríguez, Paulino Li, Huihui Montesinos-López, Osval A. Crossa, Jose Replication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breeding |
description |
In plant breeding research, several statistical machine learning methods have been developed and studied for assessing the genomic prediction (GP) accuracy of unobserved phenotypes. To increase the GP accuracy of unobserved phenotypes while simultaneously accounting for the complexity of genotype × environment interaction (GE), deep learning (DL) neural networks have been developed.These analyses can potentially include phenomics data obtained through imaging.
The two datasets included in this study contain phenomic, phenotypic, and genotypic data for a set of wheat materials. They have been used to compare a novel DL method with conventional GP models.The results of these analyses are reported in the accompanying journal article. |
author2 |
Dreher, Kate |
author_facet |
Dreher, Kate Montesinos-López, Abelardo Rivera Amado, Alma Carolina Pinto, Francisco Piñera Chavez, Francisco Javier Gonzalez, David Reynolds, Matthew Pérez-Rodríguez, Paulino Li, Huihui Montesinos-López, Osval A. Crossa, Jose |
format |
Experimental data |
topic_facet |
Agricultural Sciences Plant Breeding Grain yield Thousand grain weight Canopy normalized difference vegetation index Agricultural research Triticum aestivum Wheat |
author |
Montesinos-López, Abelardo Rivera Amado, Alma Carolina Pinto, Francisco Piñera Chavez, Francisco Javier Gonzalez, David Reynolds, Matthew Pérez-Rodríguez, Paulino Li, Huihui Montesinos-López, Osval A. Crossa, Jose |
author_sort |
Montesinos-López, Abelardo |
title |
Replication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breeding |
title_short |
Replication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breeding |
title_full |
Replication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breeding |
title_fullStr |
Replication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breeding |
title_full_unstemmed |
Replication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breeding |
title_sort |
replication data for: multimodal deep learning methods enhance genomic prediction of wheat breeding |
publisher |
CIMMYT Research Data & Software Repository Network |
publishDate |
2023 |
url |
https://hdl.handle.net/11529/10548885 |
work_keys_str_mv |
AT montesinoslopezabelardo replicationdataformultimodaldeeplearningmethodsenhancegenomicpredictionofwheatbreeding AT riveraamadoalmacarolina replicationdataformultimodaldeeplearningmethodsenhancegenomicpredictionofwheatbreeding AT pintofrancisco replicationdataformultimodaldeeplearningmethodsenhancegenomicpredictionofwheatbreeding AT pinerachavezfranciscojavier replicationdataformultimodaldeeplearningmethodsenhancegenomicpredictionofwheatbreeding AT gonzalezdavid replicationdataformultimodaldeeplearningmethodsenhancegenomicpredictionofwheatbreeding AT reynoldsmatthew replicationdataformultimodaldeeplearningmethodsenhancegenomicpredictionofwheatbreeding AT perezrodriguezpaulino replicationdataformultimodaldeeplearningmethodsenhancegenomicpredictionofwheatbreeding AT lihuihui replicationdataformultimodaldeeplearningmethodsenhancegenomicpredictionofwheatbreeding AT montesinoslopezosvala replicationdataformultimodaldeeplearningmethodsenhancegenomicpredictionofwheatbreeding AT crossajose replicationdataformultimodaldeeplearningmethodsenhancegenomicpredictionofwheatbreeding |
_version_ |
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