Replication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breeding

In plant breeding research, several statistical machine learning methods have been developed and studied for assessing the genomic prediction (GP) accuracy of unobserved phenotypes. To increase the GP accuracy of unobserved phenotypes while simultaneously accounting for the complexity of genotype × environment interaction (GE), deep learning (DL) neural networks have been developed.These analyses can potentially include phenomics data obtained through imaging. The two datasets included in this study contain phenomic, phenotypic, and genotypic data for a set of wheat materials. They have been used to compare a novel DL method with conventional GP models.The results of these analyses are reported in the accompanying journal article.

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Main Authors: Montesinos-López, Abelardo, Rivera Amado, Alma Carolina, Pinto, Francisco, Piñera Chavez, Francisco Javier, Gonzalez, David, Reynolds, Matthew, Pérez-Rodríguez, Paulino, Li, Huihui, Montesinos-López, Osval A., Crossa, Jose
Other Authors: Dreher, Kate
Format: Experimental data biblioteca
Language:English
Published: CIMMYT Research Data & Software Repository Network 2023
Subjects:Agricultural Sciences, Plant Breeding, Grain yield, Thousand grain weight, Canopy normalized difference vegetation index, Agricultural research, Triticum aestivum, Wheat,
Online Access:https://hdl.handle.net/11529/10548885
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spelling dat-cimmyt-11529105488852023-08-16T01:00:05ZReplication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breedinghttps://hdl.handle.net/11529/10548885Montesinos-López, AbelardoRivera Amado, Alma CarolinaPinto, FranciscoPiñera Chavez, Francisco JavierGonzalez, DavidReynolds, MatthewPérez-Rodríguez, PaulinoLi, HuihuiMontesinos-López, Osval A.Crossa, JoseCIMMYT Research Data & Software Repository NetworkIn plant breeding research, several statistical machine learning methods have been developed and studied for assessing the genomic prediction (GP) accuracy of unobserved phenotypes. To increase the GP accuracy of unobserved phenotypes while simultaneously accounting for the complexity of genotype × environment interaction (GE), deep learning (DL) neural networks have been developed.These analyses can potentially include phenomics data obtained through imaging. The two datasets included in this study contain phenomic, phenotypic, and genotypic data for a set of wheat materials. They have been used to compare a novel DL method with conventional GP models.The results of these analyses are reported in the accompanying journal article.Agricultural SciencesPlant BreedingGrain yieldThousand grain weightCanopy normalized difference vegetation indexAgricultural researchTriticum aestivumWheatEnglish2023Dreher, KateCGIAR Research Program on Wheat (WHEAT)Genetic Resources Program (GRP)Global Wheat Program (GWP)Bill and Melinda Gates Foundation (BMGF)United States Agency for International Development (USAID)Biometrics and Statistics Unit (BSU)CGIARAgricultural Agreement Research Fund (JA)Accelerating Genetic Gains in Maize and Wheat for Improved Livelihoods (AGG)Heat and Drought Wheat Improvement Consortium (HeDWIC)International Wheat Yield Partnership (IWYP)Foundation for Research Levy on Agricultural Products (FFL)Foreign, Commonwealth and Development Office (FCDO)Research Council of NorwayFoundation for Food and Agriculture ResearchExperimental dataPhenotypic dataGenotypic data
institution CIMMYT
collection Dataverse
country México
countrycode MX
component Datos de investigación
access En linea
En linea
databasecode dat-cimmyt
tag biblioteca
region America del Norte
libraryname Centro Internacional de Mejoramiento de Maíz y Trigo
language English
topic Agricultural Sciences
Plant Breeding
Grain yield
Thousand grain weight
Canopy normalized difference vegetation index
Agricultural research
Triticum aestivum
Wheat
Agricultural Sciences
Plant Breeding
Grain yield
Thousand grain weight
Canopy normalized difference vegetation index
Agricultural research
Triticum aestivum
Wheat
spellingShingle Agricultural Sciences
Plant Breeding
Grain yield
Thousand grain weight
Canopy normalized difference vegetation index
Agricultural research
Triticum aestivum
Wheat
Agricultural Sciences
Plant Breeding
Grain yield
Thousand grain weight
Canopy normalized difference vegetation index
Agricultural research
Triticum aestivum
Wheat
Montesinos-López, Abelardo
Rivera Amado, Alma Carolina
Pinto, Francisco
Piñera Chavez, Francisco Javier
Gonzalez, David
Reynolds, Matthew
Pérez-Rodríguez, Paulino
Li, Huihui
Montesinos-López, Osval A.
Crossa, Jose
Replication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breeding
description In plant breeding research, several statistical machine learning methods have been developed and studied for assessing the genomic prediction (GP) accuracy of unobserved phenotypes. To increase the GP accuracy of unobserved phenotypes while simultaneously accounting for the complexity of genotype × environment interaction (GE), deep learning (DL) neural networks have been developed.These analyses can potentially include phenomics data obtained through imaging. The two datasets included in this study contain phenomic, phenotypic, and genotypic data for a set of wheat materials. They have been used to compare a novel DL method with conventional GP models.The results of these analyses are reported in the accompanying journal article.
author2 Dreher, Kate
author_facet Dreher, Kate
Montesinos-López, Abelardo
Rivera Amado, Alma Carolina
Pinto, Francisco
Piñera Chavez, Francisco Javier
Gonzalez, David
Reynolds, Matthew
Pérez-Rodríguez, Paulino
Li, Huihui
Montesinos-López, Osval A.
Crossa, Jose
format Experimental data
topic_facet Agricultural Sciences
Plant Breeding
Grain yield
Thousand grain weight
Canopy normalized difference vegetation index
Agricultural research
Triticum aestivum
Wheat
author Montesinos-López, Abelardo
Rivera Amado, Alma Carolina
Pinto, Francisco
Piñera Chavez, Francisco Javier
Gonzalez, David
Reynolds, Matthew
Pérez-Rodríguez, Paulino
Li, Huihui
Montesinos-López, Osval A.
Crossa, Jose
author_sort Montesinos-López, Abelardo
title Replication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breeding
title_short Replication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breeding
title_full Replication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breeding
title_fullStr Replication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breeding
title_full_unstemmed Replication Data for: Multimodal Deep Learning Methods Enhance Genomic Prediction of Wheat Breeding
title_sort replication data for: multimodal deep learning methods enhance genomic prediction of wheat breeding
publisher CIMMYT Research Data & Software Repository Network
publishDate 2023
url https://hdl.handle.net/11529/10548885
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