Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds

Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds

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Fil: Nunes Nesi, Adriano.Universidade Federal de Viçosa. Departamento de Biologia Vegetal. Viçosa, Minas Gerais, Brazil.

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Main Authors: Nunes Nesi, Adriano, Alseekh, Saleh, Oliveira Silva, Franklin Magnum de, Omranian, Nooshin, Lichtenstein, Gabriel, Mirnezhad, Mohammad, Romero González, Roman R., Carrari, Fernando
Format: article biblioteca
Language:eng
Subjects:METABOLITE QTL, TOMATO, LEAF METABOLISM, METABOLITE NETWORK,
Online Access:http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2019nunesnesi
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spelling snrd:2019nunesnesi2021-10-15T16:56:07Z Nunes Nesi, Adriano Alseekh, Saleh Oliveira Silva, Franklin Magnum de Omranian, Nooshin Lichtenstein, Gabriel Mirnezhad, Mohammad Romero González, Roman R. Carrari, Fernando 2019 Fil: Nunes Nesi, Adriano.Universidade Federal de Viçosa. Departamento de Biologia Vegetal. Viçosa, Minas Gerais, Brazil. Fil: Alseekh, Saleh. Max - Planck- Institute of Molecular Plant Physiology. Potsdam, Germany. Fil: Oliveira Silva, Franklin Magnum de. Universidade Federal de Viçosa. Departamento de Biologia Vegetal. Viçosa, Minas Gerais, Brazil. Fil: Omranian, Nooshin. Max - Planck- Institute of Molecular Plant Physiology. Potsdam, Germany. Fil: Lichtenstein, Gabriel. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología. Castelar, Buenos Aires, Argentina. Fil: Mirnezhad, Mohammad. Leiden University. Plant Ecology, Institute of Biology. The Netherlands. Fil: Romero González, Roman R. Leiden University. Plant Ecology. Institute of Biology. The Netherlands. Fil: Carrari, Fernando. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Biotecnología. Castelar, Buenos Aires, Argentina. Introduction To date, most studies of natural variation and metabolite quantitative trait loci (mQTL) in tomato have focused on fruit metabolism, leaving aside the identification of genomic regions involved in the regulation of leaf metabolism. Objective This study was conducted to identify leaf mQTL in tomato and to assess the association of leaf metabolites and physiological traits with the metabolite levels from other tissues. Methods The analysis of components of leaf metabolism was performed by phenotypying 76 tomato ILs with chromosome segments of the wild species Solanum pennellii in the genetic background of a cultivated tomato (S. lycopersicum) variety M82. The plants were cultivated in two different environments in independent years and samples were harvested from mature leaves of non-flowering plants at the middle of the light period. The non-targeted metabolite profiling was obtained by gas chromatography time-of-flight mass spectrometry (GC-TOF-MS). With the data set obtained in this study and already published metabolomics data from seed and fruit, we performed QTL mapping, heritability and correlation analyses. Results Changes in metabolite contents were evident in the ILs that are potentially important with respect to stress responses and plant physiology. By analyzing the obtained data, we identified 42 positive and 76 negative mQTL involved in carbon and nitrogen metabolism. Conclusions Overall, these findings allowed the identification of S. lycopersicum genome regions involved in the regulation of leaf primary carbon and nitrogen metabolism, as well as the association of leaf metabolites with metabolites from seeds and fruits. grafs., tbls. application/pdf 10.1007/s11306-019-1503-8 1573-3882 http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2019nunesnesi eng info:eu-repo/semantics/openAccess openAccess http://ri.agro.uba.ar/greenstone3/library/page/biblioteca#section4 Metabolomics Vol.15, no.46 1-13 https://link.springer.com METABOLITE QTL TOMATO LEAF METABOLISM METABOLITE NETWORK Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds article info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion publishedVersion
institution UBA
collection DSpace
country Argentina
countrycode AR
component Bibliográfico
access En linea
databasecode dig-ubafa
tag biblioteca
region America del Sur
libraryname Biblioteca Facultad de Agronomía
language eng
topic METABOLITE QTL
TOMATO
LEAF METABOLISM
METABOLITE NETWORK
METABOLITE QTL
TOMATO
LEAF METABOLISM
METABOLITE NETWORK
spellingShingle METABOLITE QTL
TOMATO
LEAF METABOLISM
METABOLITE NETWORK
METABOLITE QTL
TOMATO
LEAF METABOLISM
METABOLITE NETWORK
Nunes Nesi, Adriano
Alseekh, Saleh
Oliveira Silva, Franklin Magnum de
Omranian, Nooshin
Lichtenstein, Gabriel
Mirnezhad, Mohammad
Romero González, Roman R.
Carrari, Fernando
Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds
description Fil: Nunes Nesi, Adriano.Universidade Federal de Viçosa. Departamento de Biologia Vegetal. Viçosa, Minas Gerais, Brazil.
format article
topic_facet METABOLITE QTL
TOMATO
LEAF METABOLISM
METABOLITE NETWORK
author Nunes Nesi, Adriano
Alseekh, Saleh
Oliveira Silva, Franklin Magnum de
Omranian, Nooshin
Lichtenstein, Gabriel
Mirnezhad, Mohammad
Romero González, Roman R.
Carrari, Fernando
author_facet Nunes Nesi, Adriano
Alseekh, Saleh
Oliveira Silva, Franklin Magnum de
Omranian, Nooshin
Lichtenstein, Gabriel
Mirnezhad, Mohammad
Romero González, Roman R.
Carrari, Fernando
author_sort Nunes Nesi, Adriano
title Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds
title_short Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds
title_full Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds
title_fullStr Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds
title_full_unstemmed Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds
title_sort identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds
url http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2019nunesnesi
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