DECISION TREE AS A TOOL IN THE CLASSIFICATION OF LIMA BEAN ACCESSIONS

ABSTRACT Morpho-agronomic characterization studies aiming at the discrimination and classification of lima bean accessions in relation to the centers of domestication and biological status have been of great importance for conserving the biodiversity of this species. For this purpose, researchers have widely used the multivariate analysis called discriminant analysis, which is not always capable of producing satisfactory results. Computational intelligence-based classifiers are additional tools for understanding complex classification problems. In this study, the objective was to test the use of the decision tree in the classification of lima bean according to the centers of domestication and biological status (cultivated and wild), based on eight phenotypic traits of the seed. Sixty accessions of lima bean from the Phaseolus Germplasm Bank of Universidade Federal do Piauí (BGP / UFPI) were evaluated, and classification was performed using two approaches: conventional statistics with discriminant analysis of principal components (DAPC) and computational intelligence through decision tree (DT). The results showed that the use of DT was efficient to identify patterns in the classification of lima bean accessions, due to its comprehensibility. Seed weight was one of the main descriptors used to explain the origin and diversity of the species. The results found will be useful for studies that involve the conservation of genetic resources, mainly for the maintenance of germplasm banks and in breeding programs. In addition, it is recommended to integrate machine learning algorithms in studies aimed at classifying lima bean.

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Main Authors: ALMEIDA,RAFAEL DA COSTA, NETO,WILSON VITORINO DE ASSUNÇÃO, SILVA,VERÔNICA BRITO DA, CARVALHO,LEONARDO CASTELO BRANCO, LOPES,ÂNGELA CELIS DE ALMEIDA, GOMES,REGINA LUCIA FERREIRA
Format: Digital revista
Language:English
Published: Universidade Federal Rural do Semi-Árido 2021
Online Access:http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1983-21252021000200471
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spelling oai:scielo:S1983-212520210002004712021-07-08DECISION TREE AS A TOOL IN THE CLASSIFICATION OF LIMA BEAN ACCESSIONSALMEIDA,RAFAEL DA COSTANETO,WILSON VITORINO DE ASSUNÇÃOSILVA,VERÔNICA BRITO DACARVALHO,LEONARDO CASTELO BRANCOLOPES,ÂNGELA CELIS DE ALMEIDAGOMES,REGINA LUCIA FERREIRA Phaseolus lunatus L Machine learning Computational intelligence Multivariate methods ABSTRACT Morpho-agronomic characterization studies aiming at the discrimination and classification of lima bean accessions in relation to the centers of domestication and biological status have been of great importance for conserving the biodiversity of this species. For this purpose, researchers have widely used the multivariate analysis called discriminant analysis, which is not always capable of producing satisfactory results. Computational intelligence-based classifiers are additional tools for understanding complex classification problems. In this study, the objective was to test the use of the decision tree in the classification of lima bean according to the centers of domestication and biological status (cultivated and wild), based on eight phenotypic traits of the seed. Sixty accessions of lima bean from the Phaseolus Germplasm Bank of Universidade Federal do Piauí (BGP / UFPI) were evaluated, and classification was performed using two approaches: conventional statistics with discriminant analysis of principal components (DAPC) and computational intelligence through decision tree (DT). The results showed that the use of DT was efficient to identify patterns in the classification of lima bean accessions, due to its comprehensibility. Seed weight was one of the main descriptors used to explain the origin and diversity of the species. The results found will be useful for studies that involve the conservation of genetic resources, mainly for the maintenance of germplasm banks and in breeding programs. In addition, it is recommended to integrate machine learning algorithms in studies aimed at classifying lima bean.info:eu-repo/semantics/openAccessUniversidade Federal Rural do Semi-ÁridoRevista Caatinga v.34 n.2 20212021-06-01info:eu-repo/semantics/articletext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1983-21252021000200471en10.1590/1983-21252021v34n223rc
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author ALMEIDA,RAFAEL DA COSTA
NETO,WILSON VITORINO DE ASSUNÇÃO
SILVA,VERÔNICA BRITO DA
CARVALHO,LEONARDO CASTELO BRANCO
LOPES,ÂNGELA CELIS DE ALMEIDA
GOMES,REGINA LUCIA FERREIRA
spellingShingle ALMEIDA,RAFAEL DA COSTA
NETO,WILSON VITORINO DE ASSUNÇÃO
SILVA,VERÔNICA BRITO DA
CARVALHO,LEONARDO CASTELO BRANCO
LOPES,ÂNGELA CELIS DE ALMEIDA
GOMES,REGINA LUCIA FERREIRA
DECISION TREE AS A TOOL IN THE CLASSIFICATION OF LIMA BEAN ACCESSIONS
author_facet ALMEIDA,RAFAEL DA COSTA
NETO,WILSON VITORINO DE ASSUNÇÃO
SILVA,VERÔNICA BRITO DA
CARVALHO,LEONARDO CASTELO BRANCO
LOPES,ÂNGELA CELIS DE ALMEIDA
GOMES,REGINA LUCIA FERREIRA
author_sort ALMEIDA,RAFAEL DA COSTA
title DECISION TREE AS A TOOL IN THE CLASSIFICATION OF LIMA BEAN ACCESSIONS
title_short DECISION TREE AS A TOOL IN THE CLASSIFICATION OF LIMA BEAN ACCESSIONS
title_full DECISION TREE AS A TOOL IN THE CLASSIFICATION OF LIMA BEAN ACCESSIONS
title_fullStr DECISION TREE AS A TOOL IN THE CLASSIFICATION OF LIMA BEAN ACCESSIONS
title_full_unstemmed DECISION TREE AS A TOOL IN THE CLASSIFICATION OF LIMA BEAN ACCESSIONS
title_sort decision tree as a tool in the classification of lima bean accessions
description ABSTRACT Morpho-agronomic characterization studies aiming at the discrimination and classification of lima bean accessions in relation to the centers of domestication and biological status have been of great importance for conserving the biodiversity of this species. For this purpose, researchers have widely used the multivariate analysis called discriminant analysis, which is not always capable of producing satisfactory results. Computational intelligence-based classifiers are additional tools for understanding complex classification problems. In this study, the objective was to test the use of the decision tree in the classification of lima bean according to the centers of domestication and biological status (cultivated and wild), based on eight phenotypic traits of the seed. Sixty accessions of lima bean from the Phaseolus Germplasm Bank of Universidade Federal do Piauí (BGP / UFPI) were evaluated, and classification was performed using two approaches: conventional statistics with discriminant analysis of principal components (DAPC) and computational intelligence through decision tree (DT). The results showed that the use of DT was efficient to identify patterns in the classification of lima bean accessions, due to its comprehensibility. Seed weight was one of the main descriptors used to explain the origin and diversity of the species. The results found will be useful for studies that involve the conservation of genetic resources, mainly for the maintenance of germplasm banks and in breeding programs. In addition, it is recommended to integrate machine learning algorithms in studies aimed at classifying lima bean.
publisher Universidade Federal Rural do Semi-Árido
publishDate 2021
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1983-21252021000200471
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