Genetic evaluation and characterization using cluster heat map to assess NaCl tolerance in tomato germplasm at the seedling stage

ABSTRACT Salinity is a serious problem that limits crop growth and yield. The present study used plotting to evaluate 25 tomato (Solanum lycopersicum L.) accessions for various morpho-physiological parameters at the seedling stage and identify significantly salt-tolerant tomato lines at three different salinity levels. The pot experiment had a completely randomized design with three replicates in a factorial arrangement under greenhouse conditions. Tomato plants were exposed to 0 (control), 8, and 12 dS m-1 as NaCl stress at the seedling stage. The morpho-physiological traits, such as root and shoot length, root/shoot ratio, number of leaves, fresh and dry shoot weight, fresh and dry root weight, leaf area, Na+ and K+ concentrations, K+/Na+ ratio, and tolerance index, were recorded to examine salt tolerance. According to principal component analysis (PCA), there were six principal components (PCs) with Eigen values > 1 and 77.2% of total cumulative variability. The PC1 (24.3%) revealed the highest variability followed by PC2 (16.2%). Meanwhile, the PCA biplot and cluster heat map analyses indicated that Subarctic, Raad-Red, Naqeeb, Pakit, Tommy-Toe, and BL-1076 were salt-tolerant, whereas PBLA-1401, PB-017902, CLN-2413, BL-1078, BL-1174, and BL-1079 were the most susceptible accessions based on their performance under stress.

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Main Authors: Rehman,Fazal, Saeed,Asif, Yaseen,Muhammad, Shakeel,Amir, Ziaf,Khurram, Munir,Hassan, Tariq,Sultan Ali, Raza,Muhammad Ahsan, Riaz,Awais
Format: Digital revista
Language:English
Published: Instituto de Investigaciones Agropecuarias, INIA 2019
Online Access:http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0718-58392019000100056
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spelling oai:scielo:S0718-583920190001000562019-02-19Genetic evaluation and characterization using cluster heat map to assess NaCl tolerance in tomato germplasm at the seedling stageRehman,FazalSaeed,AsifYaseen,MuhammadShakeel,AmirZiaf,KhurramMunir,HassanTariq,Sultan AliRaza,Muhammad AhsanRiaz,Awais Cluster heat map pot experiment principal component analysis salinity Solanum lycopersicum tomato seedling ABSTRACT Salinity is a serious problem that limits crop growth and yield. The present study used plotting to evaluate 25 tomato (Solanum lycopersicum L.) accessions for various morpho-physiological parameters at the seedling stage and identify significantly salt-tolerant tomato lines at three different salinity levels. The pot experiment had a completely randomized design with three replicates in a factorial arrangement under greenhouse conditions. Tomato plants were exposed to 0 (control), 8, and 12 dS m-1 as NaCl stress at the seedling stage. The morpho-physiological traits, such as root and shoot length, root/shoot ratio, number of leaves, fresh and dry shoot weight, fresh and dry root weight, leaf area, Na+ and K+ concentrations, K+/Na+ ratio, and tolerance index, were recorded to examine salt tolerance. According to principal component analysis (PCA), there were six principal components (PCs) with Eigen values > 1 and 77.2% of total cumulative variability. The PC1 (24.3%) revealed the highest variability followed by PC2 (16.2%). Meanwhile, the PCA biplot and cluster heat map analyses indicated that Subarctic, Raad-Red, Naqeeb, Pakit, Tommy-Toe, and BL-1076 were salt-tolerant, whereas PBLA-1401, PB-017902, CLN-2413, BL-1078, BL-1174, and BL-1079 were the most susceptible accessions based on their performance under stress.info:eu-repo/semantics/openAccessInstituto de Investigaciones Agropecuarias, INIAChilean journal of agricultural research v.79 n.1 20192019-03-01text/htmlhttp://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0718-58392019000100056en10.4067/S0718-58392019000100056
institution SCIELO
collection OJS
country Chile
countrycode CL
component Revista
access En linea
databasecode rev-scielo-cl
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region America del Sur
libraryname SciELO
language English
format Digital
author Rehman,Fazal
Saeed,Asif
Yaseen,Muhammad
Shakeel,Amir
Ziaf,Khurram
Munir,Hassan
Tariq,Sultan Ali
Raza,Muhammad Ahsan
Riaz,Awais
spellingShingle Rehman,Fazal
Saeed,Asif
Yaseen,Muhammad
Shakeel,Amir
Ziaf,Khurram
Munir,Hassan
Tariq,Sultan Ali
Raza,Muhammad Ahsan
Riaz,Awais
Genetic evaluation and characterization using cluster heat map to assess NaCl tolerance in tomato germplasm at the seedling stage
author_facet Rehman,Fazal
Saeed,Asif
Yaseen,Muhammad
Shakeel,Amir
Ziaf,Khurram
Munir,Hassan
Tariq,Sultan Ali
Raza,Muhammad Ahsan
Riaz,Awais
author_sort Rehman,Fazal
title Genetic evaluation and characterization using cluster heat map to assess NaCl tolerance in tomato germplasm at the seedling stage
title_short Genetic evaluation and characterization using cluster heat map to assess NaCl tolerance in tomato germplasm at the seedling stage
title_full Genetic evaluation and characterization using cluster heat map to assess NaCl tolerance in tomato germplasm at the seedling stage
title_fullStr Genetic evaluation and characterization using cluster heat map to assess NaCl tolerance in tomato germplasm at the seedling stage
title_full_unstemmed Genetic evaluation and characterization using cluster heat map to assess NaCl tolerance in tomato germplasm at the seedling stage
title_sort genetic evaluation and characterization using cluster heat map to assess nacl tolerance in tomato germplasm at the seedling stage
description ABSTRACT Salinity is a serious problem that limits crop growth and yield. The present study used plotting to evaluate 25 tomato (Solanum lycopersicum L.) accessions for various morpho-physiological parameters at the seedling stage and identify significantly salt-tolerant tomato lines at three different salinity levels. The pot experiment had a completely randomized design with three replicates in a factorial arrangement under greenhouse conditions. Tomato plants were exposed to 0 (control), 8, and 12 dS m-1 as NaCl stress at the seedling stage. The morpho-physiological traits, such as root and shoot length, root/shoot ratio, number of leaves, fresh and dry shoot weight, fresh and dry root weight, leaf area, Na+ and K+ concentrations, K+/Na+ ratio, and tolerance index, were recorded to examine salt tolerance. According to principal component analysis (PCA), there were six principal components (PCs) with Eigen values > 1 and 77.2% of total cumulative variability. The PC1 (24.3%) revealed the highest variability followed by PC2 (16.2%). Meanwhile, the PCA biplot and cluster heat map analyses indicated that Subarctic, Raad-Red, Naqeeb, Pakit, Tommy-Toe, and BL-1076 were salt-tolerant, whereas PBLA-1401, PB-017902, CLN-2413, BL-1078, BL-1174, and BL-1079 were the most susceptible accessions based on their performance under stress.
publisher Instituto de Investigaciones Agropecuarias, INIA
publishDate 2019
url http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0718-58392019000100056
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