Longitudinal model for categorical data applied in an agriculture experiment about elephant grass

ABSTRACT Experiments where the response is a categorical variable are usually carried out in many fields such as agriculture. In addition, in some situations this response has three or more levels without an order between them characterizing a multinomial (nominal) response. Statistical models for scenarios where the observations of a nominal response can be considered independent have an extensive literature, such as the baseline-category logit models. However, situations where this assumption is violated (as in longitudinal studies) require specific models that take into consideration the dependence between observations. In this paper, a fairly new extension of the generalized estimating equations is applied to analyze an experiment carried out to investigate the type of vegetation observed in an elephant grass pasture, according to some management conditions over time. This extension uses local odds ratios to explain the dependence among the categories of the outcome over the repeated measurements. Two different structures were compared to describe this dependence, and the Wald test was used to select the significant variables. Further, we built confidence intervals for the predicted probabilities of occurrence of each category and assessed the results comparing observed/predicted values and using the diagnostic analysis. The results allowed to conclude that there are various significant effects for treatments and for time. The structure of local odds ratio also proved as a good way to describe the dependence between categorical responses over time.

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Main Authors: Menarin,Vinícius, Lara,Idemauro Antonio Rodrigues de, Silva,Sila Carneiro da
Format: Digital revista
Language:English
Published: Escola Superior de Agricultura "Luiz de Queiroz" 2017
Online Access:http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162017000400265
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spelling oai:scielo:S0103-901620170004002652017-05-11Longitudinal model for categorical data applied in an agriculture experiment about elephant grassMenarin,ViníciusLara,Idemauro Antonio Rodrigues deSilva,Sila Carneiro da type of vegetation longitudinal multinomial data generalized estimating equations local odds ratio ABSTRACT Experiments where the response is a categorical variable are usually carried out in many fields such as agriculture. In addition, in some situations this response has three or more levels without an order between them characterizing a multinomial (nominal) response. Statistical models for scenarios where the observations of a nominal response can be considered independent have an extensive literature, such as the baseline-category logit models. However, situations where this assumption is violated (as in longitudinal studies) require specific models that take into consideration the dependence between observations. In this paper, a fairly new extension of the generalized estimating equations is applied to analyze an experiment carried out to investigate the type of vegetation observed in an elephant grass pasture, according to some management conditions over time. This extension uses local odds ratios to explain the dependence among the categories of the outcome over the repeated measurements. Two different structures were compared to describe this dependence, and the Wald test was used to select the significant variables. Further, we built confidence intervals for the predicted probabilities of occurrence of each category and assessed the results comparing observed/predicted values and using the diagnostic analysis. The results allowed to conclude that there are various significant effects for treatments and for time. The structure of local odds ratio also proved as a good way to describe the dependence between categorical responses over time.info:eu-repo/semantics/openAccessEscola Superior de Agricultura "Luiz de Queiroz"Scientia Agricola v.74 n.4 20172017-08-01info:eu-repo/semantics/articletext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162017000400265en10.1590/1678-992x-2016-0067
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country Brasil
countrycode BR
component Revista
access En linea
databasecode rev-scielo-br
tag revista
region America del Sur
libraryname SciELO
language English
format Digital
author Menarin,Vinícius
Lara,Idemauro Antonio Rodrigues de
Silva,Sila Carneiro da
spellingShingle Menarin,Vinícius
Lara,Idemauro Antonio Rodrigues de
Silva,Sila Carneiro da
Longitudinal model for categorical data applied in an agriculture experiment about elephant grass
author_facet Menarin,Vinícius
Lara,Idemauro Antonio Rodrigues de
Silva,Sila Carneiro da
author_sort Menarin,Vinícius
title Longitudinal model for categorical data applied in an agriculture experiment about elephant grass
title_short Longitudinal model for categorical data applied in an agriculture experiment about elephant grass
title_full Longitudinal model for categorical data applied in an agriculture experiment about elephant grass
title_fullStr Longitudinal model for categorical data applied in an agriculture experiment about elephant grass
title_full_unstemmed Longitudinal model for categorical data applied in an agriculture experiment about elephant grass
title_sort longitudinal model for categorical data applied in an agriculture experiment about elephant grass
description ABSTRACT Experiments where the response is a categorical variable are usually carried out in many fields such as agriculture. In addition, in some situations this response has three or more levels without an order between them characterizing a multinomial (nominal) response. Statistical models for scenarios where the observations of a nominal response can be considered independent have an extensive literature, such as the baseline-category logit models. However, situations where this assumption is violated (as in longitudinal studies) require specific models that take into consideration the dependence between observations. In this paper, a fairly new extension of the generalized estimating equations is applied to analyze an experiment carried out to investigate the type of vegetation observed in an elephant grass pasture, according to some management conditions over time. This extension uses local odds ratios to explain the dependence among the categories of the outcome over the repeated measurements. Two different structures were compared to describe this dependence, and the Wald test was used to select the significant variables. Further, we built confidence intervals for the predicted probabilities of occurrence of each category and assessed the results comparing observed/predicted values and using the diagnostic analysis. The results allowed to conclude that there are various significant effects for treatments and for time. The structure of local odds ratio also proved as a good way to describe the dependence between categorical responses over time.
publisher Escola Superior de Agricultura "Luiz de Queiroz"
publishDate 2017
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162017000400265
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AT laraidemauroantoniorodriguesde longitudinalmodelforcategoricaldataappliedinanagricultureexperimentaboutelephantgrass
AT silvasilacarneiroda longitudinalmodelforcategoricaldataappliedinanagricultureexperimentaboutelephantgrass
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