Selection of the most informative morphoagronomic descriptors for cassava germplasm

The objective of this work was to select the most informative morphoagronomic descriptors for cassava (Manihot esculenta) germplasm and to evaluate the ability of different methods to select the descriptors. Ninety-five accessions were characterized using 51 morphoagronomic descriptors. Data were subjected to a multiple correspondence analysis (MCA), whose information was used in the following four methods of descriptor selection: reverse order of the descriptor for the pth factorial axis of the MCA (Jolliffe); sequential, multiple correspondence analysis (SMCA); mean of the contribution orders of the descriptor in the first three factorial axes (C3PA); and C3PA method weighted by the respective eigenvalues of the full analysis (C3PAWeig). The correlations between the dissimilarity matrix with all descriptors and the most informative descriptors were high and significant (0.75, 0.77, 0.83, and 0.84 for C3PAWeig, C3PA, SMCA, and Jolliffe, respectively). The less informative descriptors were discarded, considering those common among the selection methods and relevant for the breeding interests. Therefore, 32 morphoagronomic descriptors with correlation between the dissimilarity matrices (r=0.81) were selected, due to their high capacity to discriminate cassava germplasm and to their ability to maintain some preliminary agronomic traits, useful for the initial characterization of the germplasm.

Saved in:
Bibliographic Details
Main Authors: Oliveira,Eder Jorge de, Oliveira Filho,Osvaldo Sebastião de, Santos,Vanderlei da Silva
Format: Digital revista
Language:English
Published: Embrapa Secretaria de Pesquisa e Desenvolvimento 2014
Online Access:http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2014001100891
Tags: Add Tag
No Tags, Be the first to tag this record!
id oai:scielo:S0100-204X2014001100891
record_format ojs
spelling oai:scielo:S0100-204X20140011008912015-01-05Selection of the most informative morphoagronomic descriptors for cassava germplasmOliveira,Eder Jorge deOliveira Filho,Osvaldo Sebastião deSantos,Vanderlei da Silva Manihot esculenta descriptor selection genetic resources multiple correspondence analysis The objective of this work was to select the most informative morphoagronomic descriptors for cassava (Manihot esculenta) germplasm and to evaluate the ability of different methods to select the descriptors. Ninety-five accessions were characterized using 51 morphoagronomic descriptors. Data were subjected to a multiple correspondence analysis (MCA), whose information was used in the following four methods of descriptor selection: reverse order of the descriptor for the pth factorial axis of the MCA (Jolliffe); sequential, multiple correspondence analysis (SMCA); mean of the contribution orders of the descriptor in the first three factorial axes (C3PA); and C3PA method weighted by the respective eigenvalues of the full analysis (C3PAWeig). The correlations between the dissimilarity matrix with all descriptors and the most informative descriptors were high and significant (0.75, 0.77, 0.83, and 0.84 for C3PAWeig, C3PA, SMCA, and Jolliffe, respectively). The less informative descriptors were discarded, considering those common among the selection methods and relevant for the breeding interests. Therefore, 32 morphoagronomic descriptors with correlation between the dissimilarity matrices (r=0.81) were selected, due to their high capacity to discriminate cassava germplasm and to their ability to maintain some preliminary agronomic traits, useful for the initial characterization of the germplasm.info:eu-repo/semantics/openAccessEmbrapa Secretaria de Pesquisa e DesenvolvimentoPesquisa Agropecuária BrasileiraPesquisa Agropecuária Brasileira v.49 n.11 20142014-11-01info:eu-repo/semantics/articletext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2014001100891en10.1590/S0100-204X2014001100008
institution SCIELO
collection OJS
country Brasil
countrycode BR
component Revista
access En linea
databasecode rev-scielo-br
tag revista
region America del Sur
libraryname SciELO
language English
format Digital
author Oliveira,Eder Jorge de
Oliveira Filho,Osvaldo Sebastião de
Santos,Vanderlei da Silva
spellingShingle Oliveira,Eder Jorge de
Oliveira Filho,Osvaldo Sebastião de
Santos,Vanderlei da Silva
Selection of the most informative morphoagronomic descriptors for cassava germplasm
author_facet Oliveira,Eder Jorge de
Oliveira Filho,Osvaldo Sebastião de
Santos,Vanderlei da Silva
author_sort Oliveira,Eder Jorge de
title Selection of the most informative morphoagronomic descriptors for cassava germplasm
title_short Selection of the most informative morphoagronomic descriptors for cassava germplasm
title_full Selection of the most informative morphoagronomic descriptors for cassava germplasm
title_fullStr Selection of the most informative morphoagronomic descriptors for cassava germplasm
title_full_unstemmed Selection of the most informative morphoagronomic descriptors for cassava germplasm
title_sort selection of the most informative morphoagronomic descriptors for cassava germplasm
description The objective of this work was to select the most informative morphoagronomic descriptors for cassava (Manihot esculenta) germplasm and to evaluate the ability of different methods to select the descriptors. Ninety-five accessions were characterized using 51 morphoagronomic descriptors. Data were subjected to a multiple correspondence analysis (MCA), whose information was used in the following four methods of descriptor selection: reverse order of the descriptor for the pth factorial axis of the MCA (Jolliffe); sequential, multiple correspondence analysis (SMCA); mean of the contribution orders of the descriptor in the first three factorial axes (C3PA); and C3PA method weighted by the respective eigenvalues of the full analysis (C3PAWeig). The correlations between the dissimilarity matrix with all descriptors and the most informative descriptors were high and significant (0.75, 0.77, 0.83, and 0.84 for C3PAWeig, C3PA, SMCA, and Jolliffe, respectively). The less informative descriptors were discarded, considering those common among the selection methods and relevant for the breeding interests. Therefore, 32 morphoagronomic descriptors with correlation between the dissimilarity matrices (r=0.81) were selected, due to their high capacity to discriminate cassava germplasm and to their ability to maintain some preliminary agronomic traits, useful for the initial characterization of the germplasm.
publisher Embrapa Secretaria de Pesquisa e Desenvolvimento
publishDate 2014
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2014001100891
work_keys_str_mv AT oliveiraederjorgede selectionofthemostinformativemorphoagronomicdescriptorsforcassavagermplasm
AT oliveirafilhoosvaldosebastiaode selectionofthemostinformativemorphoagronomicdescriptorsforcassavagermplasm
AT santosvanderleidasilva selectionofthemostinformativemorphoagronomicdescriptorsforcassavagermplasm
_version_ 1756385972281409536