The first caprine rotavirus detected in Argentina displays genomic features resembling virus strains infecting members of the Bovidae and Camelidae
Rotavirus group A (RVA) is a major cause of diarrhea in humans and young animals including small ruminants. The purpose of this study was to identify RVA in dairy goat kids, and to characterize the complete genomic constellation and genetic relatedness with other RVA strains. Four out of twenty fecal samples from diarrheic and non-diarrheic goat kids were positive for RVA by ELISA. A representative sample was selected for further genome analyses. The RVA strain RVA/Goat-wt/ARG/0040/2011/G8P[1] displayed the following genomic constellation: G8-P[1]-I2-R5-C2-M2-A3-N2-T6-E12-H3, reminiscent to guanaco and other bovine-like RVA strains detected in Argentina. Phylogenetic analyses revealed that most of the genome segments had a rather close relatedness with RVA strains typically obtained from cattle, sheep, South American camelids and goats. Interestingly, strain 0040 possessed the R5 and E12 genotypes which have up to date only been found in different animal species from Argentina. Overall, these findings suggest that strain 0040 could represent a typical goat RVA genome constellation similar to those previously found in other animal species within the order Artiodactyla.
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Elsevier
2014-05-25
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Subjects: | Caprinos, Enfermedades de los Animales, Rotavirus, Genómica, Identificación, Goats, Animal Diseases, Genomics, Identification, Argentina, |
Online Access: | https://www.sciencedirect.com/science/article/pii/S0378113514001631 http://hdl.handle.net/20.500.12123/4824 https://doi.org/10.1016/j.vetmic.2014.03.013 |
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oai:localhost:20.500.12123-48242019-04-05T12:41:53Z The first caprine rotavirus detected in Argentina displays genomic features resembling virus strains infecting members of the Bovidae and Camelidae Louge Uriarte, Enrique Leopoldo Badaracco, Alejandra Matthijnssens, Jelle Zeller, Mark Heylen, Elizabeth Manazza, Jorge Alberto Miño, Samuel Ranst, Marc Van Odeon, Anselmo Carlos Parreño, Gladys Viviana Caprinos Enfermedades de los Animales Rotavirus Genómica Identificación Goats Animal Diseases Genomics Identification Argentina Rotavirus group A (RVA) is a major cause of diarrhea in humans and young animals including small ruminants. The purpose of this study was to identify RVA in dairy goat kids, and to characterize the complete genomic constellation and genetic relatedness with other RVA strains. Four out of twenty fecal samples from diarrheic and non-diarrheic goat kids were positive for RVA by ELISA. A representative sample was selected for further genome analyses. The RVA strain RVA/Goat-wt/ARG/0040/2011/G8P[1] displayed the following genomic constellation: G8-P[1]-I2-R5-C2-M2-A3-N2-T6-E12-H3, reminiscent to guanaco and other bovine-like RVA strains detected in Argentina. Phylogenetic analyses revealed that most of the genome segments had a rather close relatedness with RVA strains typically obtained from cattle, sheep, South American camelids and goats. Interestingly, strain 0040 possessed the R5 and E12 genotypes which have up to date only been found in different animal species from Argentina. Overall, these findings suggest that strain 0040 could represent a typical goat RVA genome constellation similar to those previously found in other animal species within the order Artiodactyla. EEA Balcarce Fil: Louge Uriarte, Enrique Leopoldo. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce. Area de Producción Animal; Argentina Fil: Badaracco, Alejandra. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Virología; Argentina Fil: Matthijnssens, Jelle. University of Leuven. Department of Microbiology and Immunology. Rega Institute for Medical Research. Laboratory of Viral Metagenomics; Bélgica. Fil: Zeller, Mark. University of Leuven. Department of Microbiology and Immunology. Rega Institute for Medical Research. Laboratory of Viral Metagenomics; Bélgica Fil: Heylen, Elisabeth. University of Leuven. Department of Microbiology and Immunology. Rega Institute for Medical Research. Laboratory of Viral Metagenomics; Bélgica Fil: Manazza, Jorge Alberto. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina Fil: Miño, Samuel. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Virología; Argentina Fil: Ranst, Marc Van. University of Leuven. Department of Microbiology and Immunology. Rega Institute for Medical Research. Laboratory of Viral Metagenomics; Bélgica Fil: Odeon, Anselmo Carlos. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Balcarce; Argentina Fil: Parreño, Gladys Viviana. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Virología; Argentina 2019-04-05T12:21:19Z 2019-04-05T12:21:19Z 2014-05-25 info:ar-repo/semantics/artículo info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion https://www.sciencedirect.com/science/article/pii/S0378113514001631 http://hdl.handle.net/20.500.12123/4824 0378-1135 https://doi.org/10.1016/j.vetmic.2014.03.013 eng info:eu-repo/semantics/restrictedAccess application/pdf Elsevier Veterinary Microbiology 171 (1–2) : 189-197 (June 2014) |
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Caprinos Enfermedades de los Animales Rotavirus Genómica Identificación Goats Animal Diseases Genomics Identification Argentina Caprinos Enfermedades de los Animales Rotavirus Genómica Identificación Goats Animal Diseases Genomics Identification Argentina |
spellingShingle |
Caprinos Enfermedades de los Animales Rotavirus Genómica Identificación Goats Animal Diseases Genomics Identification Argentina Caprinos Enfermedades de los Animales Rotavirus Genómica Identificación Goats Animal Diseases Genomics Identification Argentina Louge Uriarte, Enrique Leopoldo Badaracco, Alejandra Matthijnssens, Jelle Zeller, Mark Heylen, Elizabeth Manazza, Jorge Alberto Miño, Samuel Ranst, Marc Van Odeon, Anselmo Carlos Parreño, Gladys Viviana The first caprine rotavirus detected in Argentina displays genomic features resembling virus strains infecting members of the Bovidae and Camelidae |
description |
Rotavirus group A (RVA) is a major cause of diarrhea in humans and young animals including small ruminants. The purpose of this study was to identify RVA in dairy goat kids, and to characterize the complete genomic constellation and genetic relatedness with other RVA strains. Four out of twenty fecal samples from diarrheic and non-diarrheic goat kids were positive for RVA by ELISA. A representative sample was selected for further genome analyses. The RVA strain RVA/Goat-wt/ARG/0040/2011/G8P[1] displayed the following genomic constellation: G8-P[1]-I2-R5-C2-M2-A3-N2-T6-E12-H3, reminiscent to guanaco and other bovine-like RVA strains detected in Argentina. Phylogenetic analyses revealed that most of the genome segments had a rather close relatedness with RVA strains typically obtained from cattle, sheep, South American camelids and goats. Interestingly, strain 0040 possessed the R5 and E12 genotypes which have up to date only been found in different animal species from Argentina. Overall, these findings suggest that strain 0040 could represent a typical goat RVA genome constellation similar to those previously found in other animal species within the order Artiodactyla. |
format |
info:ar-repo/semantics/artículo |
topic_facet |
Caprinos Enfermedades de los Animales Rotavirus Genómica Identificación Goats Animal Diseases Genomics Identification Argentina |
author |
Louge Uriarte, Enrique Leopoldo Badaracco, Alejandra Matthijnssens, Jelle Zeller, Mark Heylen, Elizabeth Manazza, Jorge Alberto Miño, Samuel Ranst, Marc Van Odeon, Anselmo Carlos Parreño, Gladys Viviana |
author_facet |
Louge Uriarte, Enrique Leopoldo Badaracco, Alejandra Matthijnssens, Jelle Zeller, Mark Heylen, Elizabeth Manazza, Jorge Alberto Miño, Samuel Ranst, Marc Van Odeon, Anselmo Carlos Parreño, Gladys Viviana |
author_sort |
Louge Uriarte, Enrique Leopoldo |
title |
The first caprine rotavirus detected in Argentina displays genomic features resembling virus strains infecting members of the Bovidae and Camelidae |
title_short |
The first caprine rotavirus detected in Argentina displays genomic features resembling virus strains infecting members of the Bovidae and Camelidae |
title_full |
The first caprine rotavirus detected in Argentina displays genomic features resembling virus strains infecting members of the Bovidae and Camelidae |
title_fullStr |
The first caprine rotavirus detected in Argentina displays genomic features resembling virus strains infecting members of the Bovidae and Camelidae |
title_full_unstemmed |
The first caprine rotavirus detected in Argentina displays genomic features resembling virus strains infecting members of the Bovidae and Camelidae |
title_sort |
first caprine rotavirus detected in argentina displays genomic features resembling virus strains infecting members of the bovidae and camelidae |
publisher |
Elsevier |
publishDate |
2014-05-25 |
url |
https://www.sciencedirect.com/science/article/pii/S0378113514001631 http://hdl.handle.net/20.500.12123/4824 https://doi.org/10.1016/j.vetmic.2014.03.013 |
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