A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells
Saccharomyces cerevisiae adjusts its metabolism based on nutrient availability, typically transitioning from glucose fermentation to ethanol respiration as glucose becomes limiting. However, our understanding of the regulation of metabolism is largely based on population averages, whereas nutrient transitions may cause heterogeneous responses. Here we introduce iCRAFT, a method that couples the ATP Förster resonance energy transfer (FRET)-based biosensor yAT1.03 with Antimycin A to differentiate fermentative and respiratory metabolisms in individual yeast cells. Upon Antimycin A addition, respiratory cells experienced a sharp decrease of the normalized FRET ratio, while respiro-fermentative cells showed no response. Next, we tracked changes in metabolism during the diauxic shift of a glucose pre-grown culture. Following glucose exhaustion, the entire cell population experienced a progressive rise in cytosolic ATP produced via respiration, suggesting a gradual increase in respiratory capacity. Overall, iCRAFT is a robust tool to distinguish fermentation from respiration, offering a new single-cell opportunity to study yeast metabolism.
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Subjects: | Cell biology, Microbial biotechnology, |
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dig-wur-nl-wurpubs-6249772024-12-04 Luzia, Laura Battjes, Julius Zwering, Emile Jansen, Derek Melkonian, Chrats Teusink, Bas Article/Letter to editor iScience 27 (2024) 1 ISSN: 2589-0042 A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells 2024 Saccharomyces cerevisiae adjusts its metabolism based on nutrient availability, typically transitioning from glucose fermentation to ethanol respiration as glucose becomes limiting. However, our understanding of the regulation of metabolism is largely based on population averages, whereas nutrient transitions may cause heterogeneous responses. Here we introduce iCRAFT, a method that couples the ATP Förster resonance energy transfer (FRET)-based biosensor yAT1.03 with Antimycin A to differentiate fermentative and respiratory metabolisms in individual yeast cells. Upon Antimycin A addition, respiratory cells experienced a sharp decrease of the normalized FRET ratio, while respiro-fermentative cells showed no response. Next, we tracked changes in metabolism during the diauxic shift of a glucose pre-grown culture. Following glucose exhaustion, the entire cell population experienced a progressive rise in cytosolic ATP produced via respiration, suggesting a gradual increase in respiratory capacity. Overall, iCRAFT is a robust tool to distinguish fermentation from respiration, offering a new single-cell opportunity to study yeast metabolism. en application/pdf https://research.wur.nl/en/publications/a-fast-method-to-distinguish-between-fermentative-and-respiratory 10.1016/j.isci.2023.108767 https://edepot.wur.nl/646815 Cell biology Microbial biotechnology https://creativecommons.org/licenses/by/4.0/ https://creativecommons.org/licenses/by/4.0/ Wageningen University & Research |
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Cell biology Microbial biotechnology Cell biology Microbial biotechnology Luzia, Laura Battjes, Julius Zwering, Emile Jansen, Derek Melkonian, Chrats Teusink, Bas A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells |
description |
Saccharomyces cerevisiae adjusts its metabolism based on nutrient availability, typically transitioning from glucose fermentation to ethanol respiration as glucose becomes limiting. However, our understanding of the regulation of metabolism is largely based on population averages, whereas nutrient transitions may cause heterogeneous responses. Here we introduce iCRAFT, a method that couples the ATP Förster resonance energy transfer (FRET)-based biosensor yAT1.03 with Antimycin A to differentiate fermentative and respiratory metabolisms in individual yeast cells. Upon Antimycin A addition, respiratory cells experienced a sharp decrease of the normalized FRET ratio, while respiro-fermentative cells showed no response. Next, we tracked changes in metabolism during the diauxic shift of a glucose pre-grown culture. Following glucose exhaustion, the entire cell population experienced a progressive rise in cytosolic ATP produced via respiration, suggesting a gradual increase in respiratory capacity. Overall, iCRAFT is a robust tool to distinguish fermentation from respiration, offering a new single-cell opportunity to study yeast metabolism. |
format |
Article/Letter to editor |
topic_facet |
Cell biology Microbial biotechnology |
author |
Luzia, Laura Battjes, Julius Zwering, Emile Jansen, Derek Melkonian, Chrats Teusink, Bas |
author_facet |
Luzia, Laura Battjes, Julius Zwering, Emile Jansen, Derek Melkonian, Chrats Teusink, Bas |
author_sort |
Luzia, Laura |
title |
A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells |
title_short |
A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells |
title_full |
A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells |
title_fullStr |
A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells |
title_full_unstemmed |
A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells |
title_sort |
fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells |
url |
https://research.wur.nl/en/publications/a-fast-method-to-distinguish-between-fermentative-and-respiratory |
work_keys_str_mv |
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