A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells

Saccharomyces cerevisiae adjusts its metabolism based on nutrient availability, typically transitioning from glucose fermentation to ethanol respiration as glucose becomes limiting. However, our understanding of the regulation of metabolism is largely based on population averages, whereas nutrient transitions may cause heterogeneous responses. Here we introduce iCRAFT, a method that couples the ATP Förster resonance energy transfer (FRET)-based biosensor yAT1.03 with Antimycin A to differentiate fermentative and respiratory metabolisms in individual yeast cells. Upon Antimycin A addition, respiratory cells experienced a sharp decrease of the normalized FRET ratio, while respiro-fermentative cells showed no response. Next, we tracked changes in metabolism during the diauxic shift of a glucose pre-grown culture. Following glucose exhaustion, the entire cell population experienced a progressive rise in cytosolic ATP produced via respiration, suggesting a gradual increase in respiratory capacity. Overall, iCRAFT is a robust tool to distinguish fermentation from respiration, offering a new single-cell opportunity to study yeast metabolism.

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Main Authors: Luzia, Laura, Battjes, Julius, Zwering, Emile, Jansen, Derek, Melkonian, Chrats, Teusink, Bas
Format: Article/Letter to editor biblioteca
Language:English
Subjects:Cell biology, Microbial biotechnology,
Online Access:https://research.wur.nl/en/publications/a-fast-method-to-distinguish-between-fermentative-and-respiratory
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spelling dig-wur-nl-wurpubs-6249772024-12-04 Luzia, Laura Battjes, Julius Zwering, Emile Jansen, Derek Melkonian, Chrats Teusink, Bas Article/Letter to editor iScience 27 (2024) 1 ISSN: 2589-0042 A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells 2024 Saccharomyces cerevisiae adjusts its metabolism based on nutrient availability, typically transitioning from glucose fermentation to ethanol respiration as glucose becomes limiting. However, our understanding of the regulation of metabolism is largely based on population averages, whereas nutrient transitions may cause heterogeneous responses. Here we introduce iCRAFT, a method that couples the ATP Förster resonance energy transfer (FRET)-based biosensor yAT1.03 with Antimycin A to differentiate fermentative and respiratory metabolisms in individual yeast cells. Upon Antimycin A addition, respiratory cells experienced a sharp decrease of the normalized FRET ratio, while respiro-fermentative cells showed no response. Next, we tracked changes in metabolism during the diauxic shift of a glucose pre-grown culture. Following glucose exhaustion, the entire cell population experienced a progressive rise in cytosolic ATP produced via respiration, suggesting a gradual increase in respiratory capacity. Overall, iCRAFT is a robust tool to distinguish fermentation from respiration, offering a new single-cell opportunity to study yeast metabolism. en application/pdf https://research.wur.nl/en/publications/a-fast-method-to-distinguish-between-fermentative-and-respiratory 10.1016/j.isci.2023.108767 https://edepot.wur.nl/646815 Cell biology Microbial biotechnology https://creativecommons.org/licenses/by/4.0/ https://creativecommons.org/licenses/by/4.0/ Wageningen University & Research
institution WUR NL
collection DSpace
country Países bajos
countrycode NL
component Bibliográfico
access En linea
databasecode dig-wur-nl
tag biblioteca
region Europa del Oeste
libraryname WUR Library Netherlands
language English
topic Cell biology
Microbial biotechnology
Cell biology
Microbial biotechnology
spellingShingle Cell biology
Microbial biotechnology
Cell biology
Microbial biotechnology
Luzia, Laura
Battjes, Julius
Zwering, Emile
Jansen, Derek
Melkonian, Chrats
Teusink, Bas
A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells
description Saccharomyces cerevisiae adjusts its metabolism based on nutrient availability, typically transitioning from glucose fermentation to ethanol respiration as glucose becomes limiting. However, our understanding of the regulation of metabolism is largely based on population averages, whereas nutrient transitions may cause heterogeneous responses. Here we introduce iCRAFT, a method that couples the ATP Förster resonance energy transfer (FRET)-based biosensor yAT1.03 with Antimycin A to differentiate fermentative and respiratory metabolisms in individual yeast cells. Upon Antimycin A addition, respiratory cells experienced a sharp decrease of the normalized FRET ratio, while respiro-fermentative cells showed no response. Next, we tracked changes in metabolism during the diauxic shift of a glucose pre-grown culture. Following glucose exhaustion, the entire cell population experienced a progressive rise in cytosolic ATP produced via respiration, suggesting a gradual increase in respiratory capacity. Overall, iCRAFT is a robust tool to distinguish fermentation from respiration, offering a new single-cell opportunity to study yeast metabolism.
format Article/Letter to editor
topic_facet Cell biology
Microbial biotechnology
author Luzia, Laura
Battjes, Julius
Zwering, Emile
Jansen, Derek
Melkonian, Chrats
Teusink, Bas
author_facet Luzia, Laura
Battjes, Julius
Zwering, Emile
Jansen, Derek
Melkonian, Chrats
Teusink, Bas
author_sort Luzia, Laura
title A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells
title_short A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells
title_full A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells
title_fullStr A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells
title_full_unstemmed A fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells
title_sort fast method to distinguish between fermentative and respiratory metabolisms in single yeast cells
url https://research.wur.nl/en/publications/a-fast-method-to-distinguish-between-fermentative-and-respiratory
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