Stochastic gene expression in Arabidopsis thaliana

Although plant development is highly reproducible, some stochasticity exists. This developmental stochasticity may be caused by noisy gene expression. Here we analyze the fluctuation of protein expression in Arabidopsis thaliana. Using the photoconvertible KikGR marker, we show that the protein expressions of individual cells fluctuate over time. A dual reporter system was used to study extrinsic and intrinsic noise of marker gene expression. We report that extrinsic noise is higher than intrinsic noise and that extrinsic noise in stomata is clearly lower in comparison to several other tissues/cell types. Finally, we show that cells are coupled with respect to stochastic protein expression in young leaves, hypocotyls and roots but not in mature leaves. Our data indicate that stochasticity of gene expression can vary between tissues/cell types and that it can be coupled in a non-cell-autonomous manner.

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Main Authors: Araújo, Ilka Schultheiß, Pietsch, Jessica Magdalena, Keizer, Emma Mathilde, Greese, Bettina, Balkunde, Rachappa, Fleck, Christian, Hülskamp, Martin
Format: Article/Letter to editor biblioteca
Language:English
Subjects:Life Science,
Online Access:https://research.wur.nl/en/publications/stochastic-gene-expression-in-arabidopsis-thaliana
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spelling dig-wur-nl-wurpubs-5313462024-10-30 Araújo, Ilka Schultheiß Pietsch, Jessica Magdalena Keizer, Emma Mathilde Greese, Bettina Balkunde, Rachappa Fleck, Christian Hülskamp, Martin Article/Letter to editor Nature Communications 8 (2017) 1 ISSN: 2041-1723 Stochastic gene expression in Arabidopsis thaliana 2017 Although plant development is highly reproducible, some stochasticity exists. This developmental stochasticity may be caused by noisy gene expression. Here we analyze the fluctuation of protein expression in Arabidopsis thaliana. Using the photoconvertible KikGR marker, we show that the protein expressions of individual cells fluctuate over time. A dual reporter system was used to study extrinsic and intrinsic noise of marker gene expression. We report that extrinsic noise is higher than intrinsic noise and that extrinsic noise in stomata is clearly lower in comparison to several other tissues/cell types. Finally, we show that cells are coupled with respect to stochastic protein expression in young leaves, hypocotyls and roots but not in mature leaves. Our data indicate that stochasticity of gene expression can vary between tissues/cell types and that it can be coupled in a non-cell-autonomous manner. en application/pdf https://research.wur.nl/en/publications/stochastic-gene-expression-in-arabidopsis-thaliana 10.1038/s41467-017-02285-7 https://edepot.wur.nl/430534 Life Science https://creativecommons.org/licenses/by/4.0/ Wageningen University & Research
institution WUR NL
collection DSpace
country Países bajos
countrycode NL
component Bibliográfico
access En linea
databasecode dig-wur-nl
tag biblioteca
region Europa del Oeste
libraryname WUR Library Netherlands
language English
topic Life Science
Life Science
spellingShingle Life Science
Life Science
Araújo, Ilka Schultheiß
Pietsch, Jessica Magdalena
Keizer, Emma Mathilde
Greese, Bettina
Balkunde, Rachappa
Fleck, Christian
Hülskamp, Martin
Stochastic gene expression in Arabidopsis thaliana
description Although plant development is highly reproducible, some stochasticity exists. This developmental stochasticity may be caused by noisy gene expression. Here we analyze the fluctuation of protein expression in Arabidopsis thaliana. Using the photoconvertible KikGR marker, we show that the protein expressions of individual cells fluctuate over time. A dual reporter system was used to study extrinsic and intrinsic noise of marker gene expression. We report that extrinsic noise is higher than intrinsic noise and that extrinsic noise in stomata is clearly lower in comparison to several other tissues/cell types. Finally, we show that cells are coupled with respect to stochastic protein expression in young leaves, hypocotyls and roots but not in mature leaves. Our data indicate that stochasticity of gene expression can vary between tissues/cell types and that it can be coupled in a non-cell-autonomous manner.
format Article/Letter to editor
topic_facet Life Science
author Araújo, Ilka Schultheiß
Pietsch, Jessica Magdalena
Keizer, Emma Mathilde
Greese, Bettina
Balkunde, Rachappa
Fleck, Christian
Hülskamp, Martin
author_facet Araújo, Ilka Schultheiß
Pietsch, Jessica Magdalena
Keizer, Emma Mathilde
Greese, Bettina
Balkunde, Rachappa
Fleck, Christian
Hülskamp, Martin
author_sort Araújo, Ilka Schultheiß
title Stochastic gene expression in Arabidopsis thaliana
title_short Stochastic gene expression in Arabidopsis thaliana
title_full Stochastic gene expression in Arabidopsis thaliana
title_fullStr Stochastic gene expression in Arabidopsis thaliana
title_full_unstemmed Stochastic gene expression in Arabidopsis thaliana
title_sort stochastic gene expression in arabidopsis thaliana
url https://research.wur.nl/en/publications/stochastic-gene-expression-in-arabidopsis-thaliana
work_keys_str_mv AT araujoilkaschultheiß stochasticgeneexpressioninarabidopsisthaliana
AT pietschjessicamagdalena stochasticgeneexpressioninarabidopsisthaliana
AT keizeremmamathilde stochasticgeneexpressioninarabidopsisthaliana
AT greesebettina stochasticgeneexpressioninarabidopsisthaliana
AT balkunderachappa stochasticgeneexpressioninarabidopsisthaliana
AT fleckchristian stochasticgeneexpressioninarabidopsisthaliana
AT hulskampmartin stochasticgeneexpressioninarabidopsisthaliana
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