Stochastic gene expression in Arabidopsis thaliana
Although plant development is highly reproducible, some stochasticity exists. This developmental stochasticity may be caused by noisy gene expression. Here we analyze the fluctuation of protein expression in Arabidopsis thaliana. Using the photoconvertible KikGR marker, we show that the protein expressions of individual cells fluctuate over time. A dual reporter system was used to study extrinsic and intrinsic noise of marker gene expression. We report that extrinsic noise is higher than intrinsic noise and that extrinsic noise in stomata is clearly lower in comparison to several other tissues/cell types. Finally, we show that cells are coupled with respect to stochastic protein expression in young leaves, hypocotyls and roots but not in mature leaves. Our data indicate that stochasticity of gene expression can vary between tissues/cell types and that it can be coupled in a non-cell-autonomous manner.
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dig-wur-nl-wurpubs-5313462024-10-30 Araújo, Ilka Schultheiß Pietsch, Jessica Magdalena Keizer, Emma Mathilde Greese, Bettina Balkunde, Rachappa Fleck, Christian Hülskamp, Martin Article/Letter to editor Nature Communications 8 (2017) 1 ISSN: 2041-1723 Stochastic gene expression in Arabidopsis thaliana 2017 Although plant development is highly reproducible, some stochasticity exists. This developmental stochasticity may be caused by noisy gene expression. Here we analyze the fluctuation of protein expression in Arabidopsis thaliana. Using the photoconvertible KikGR marker, we show that the protein expressions of individual cells fluctuate over time. A dual reporter system was used to study extrinsic and intrinsic noise of marker gene expression. We report that extrinsic noise is higher than intrinsic noise and that extrinsic noise in stomata is clearly lower in comparison to several other tissues/cell types. Finally, we show that cells are coupled with respect to stochastic protein expression in young leaves, hypocotyls and roots but not in mature leaves. Our data indicate that stochasticity of gene expression can vary between tissues/cell types and that it can be coupled in a non-cell-autonomous manner. en application/pdf https://research.wur.nl/en/publications/stochastic-gene-expression-in-arabidopsis-thaliana 10.1038/s41467-017-02285-7 https://edepot.wur.nl/430534 Life Science https://creativecommons.org/licenses/by/4.0/ Wageningen University & Research |
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Life Science Life Science Araújo, Ilka Schultheiß Pietsch, Jessica Magdalena Keizer, Emma Mathilde Greese, Bettina Balkunde, Rachappa Fleck, Christian Hülskamp, Martin Stochastic gene expression in Arabidopsis thaliana |
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Although plant development is highly reproducible, some stochasticity exists. This developmental stochasticity may be caused by noisy gene expression. Here we analyze the fluctuation of protein expression in Arabidopsis thaliana. Using the photoconvertible KikGR marker, we show that the protein expressions of individual cells fluctuate over time. A dual reporter system was used to study extrinsic and intrinsic noise of marker gene expression. We report that extrinsic noise is higher than intrinsic noise and that extrinsic noise in stomata is clearly lower in comparison to several other tissues/cell types. Finally, we show that cells are coupled with respect to stochastic protein expression in young leaves, hypocotyls and roots but not in mature leaves. Our data indicate that stochasticity of gene expression can vary between tissues/cell types and that it can be coupled in a non-cell-autonomous manner. |
format |
Article/Letter to editor |
topic_facet |
Life Science |
author |
Araújo, Ilka Schultheiß Pietsch, Jessica Magdalena Keizer, Emma Mathilde Greese, Bettina Balkunde, Rachappa Fleck, Christian Hülskamp, Martin |
author_facet |
Araújo, Ilka Schultheiß Pietsch, Jessica Magdalena Keizer, Emma Mathilde Greese, Bettina Balkunde, Rachappa Fleck, Christian Hülskamp, Martin |
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Araújo, Ilka Schultheiß |
title |
Stochastic gene expression in Arabidopsis thaliana |
title_short |
Stochastic gene expression in Arabidopsis thaliana |
title_full |
Stochastic gene expression in Arabidopsis thaliana |
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Stochastic gene expression in Arabidopsis thaliana |
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Stochastic gene expression in Arabidopsis thaliana |
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stochastic gene expression in arabidopsis thaliana |
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https://research.wur.nl/en/publications/stochastic-gene-expression-in-arabidopsis-thaliana |
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AT araujoilkaschultheiß stochasticgeneexpressioninarabidopsisthaliana AT pietschjessicamagdalena stochasticgeneexpressioninarabidopsisthaliana AT keizeremmamathilde stochasticgeneexpressioninarabidopsisthaliana AT greesebettina stochasticgeneexpressioninarabidopsisthaliana AT balkunderachappa stochasticgeneexpressioninarabidopsisthaliana AT fleckchristian stochasticgeneexpressioninarabidopsisthaliana AT hulskampmartin stochasticgeneexpressioninarabidopsisthaliana |
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1816157855208701952 |