Transcriptome signatures of class I and III stress response deregulation in Lactobacillus plantarum reveal pleiotropic adaptation

Background - To cope with environmental challenges bacteria possess sophisticated defense mechanisms that involve stress-induced adaptive responses. The canonical stress regulators CtsR and HrcA play a central role in the adaptations to a plethora of stresses in a variety of organisms. Here, we determined the CtsR and HrcA regulons of the lactic acid bacterium Lactobacillus plantarum WCFS1 grown under reference (28°C) and elevated (40°C) temperatures, using ctsR, hrcA, and ctsR-hrcA deletion mutants. Results - While the maximum specific growth rates of the mutants and the parental strain were similar at both temperatures (0.33¿±¿0.02 h-1 and 0.34¿±¿0.03 h-1, respectively), DNA microarray analyses revealed that the CtsR or HrcA deficient strains displayed altered transcription patterns of genes encoding functions involved in transport and binding of sugars and other compounds, primary metabolism, transcription regulation, capsular polysaccharide biosynthesis, as well as fatty acid metabolism. These transcriptional signatures enabled the refinement of the gene repertoire that is directly or indirectly controlled by CtsR and HrcA of L. plantarum. Deletion of both regulators, elicited transcriptional changes of a large variety of additional genes in a temperature-dependent manner, including genes encoding functions involved in cell-envelope remodeling. Moreover, phenotypic assays revealed that both transcription regulators contribute to regulation of resistance to hydrogen peroxide stress. The integration of these results allowed the reconstruction of CtsR and HrcA regulatory networks in L. plantarum, highlighting the significant intertwinement of class I and III stress regulons. Conclusions - Taken together, our results enabled the refinement of the CtsR and HrcA regulatory networks in L. plantarum, illustrating the complex nature of adaptive stress responses in this bacterium

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Main Authors: van Bokhorst-van de Veen, H., Bongers, R.S., Wels, M., Bron, P.A., Kleerebezem, M.
Format: Article/Letter to editor biblioteca
Language:English
Subjects:bacillus-subtilis, comparative genomics, gastrointestinal-tract, gram-positive bacteria, heat-shock response, helicobacter-pylori, lactic-acid bacteria, listeria-monocytogenes, low gc, streptococcus-pneumoniae,
Online Access:https://research.wur.nl/en/publications/transcriptome-signatures-of-class-i-and-iii-stress-response-dereg
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spelling dig-wur-nl-wurpubs-4451482024-12-04 van Bokhorst-van de Veen, H. Bongers, R.S. Wels, M. Bron, P.A. Kleerebezem, M. Article/Letter to editor Microbial Cell Factories 12 (2013) 1 ISSN: 1475-2859 Transcriptome signatures of class I and III stress response deregulation in Lactobacillus plantarum reveal pleiotropic adaptation 2013 Background - To cope with environmental challenges bacteria possess sophisticated defense mechanisms that involve stress-induced adaptive responses. The canonical stress regulators CtsR and HrcA play a central role in the adaptations to a plethora of stresses in a variety of organisms. Here, we determined the CtsR and HrcA regulons of the lactic acid bacterium Lactobacillus plantarum WCFS1 grown under reference (28°C) and elevated (40°C) temperatures, using ctsR, hrcA, and ctsR-hrcA deletion mutants. Results - While the maximum specific growth rates of the mutants and the parental strain were similar at both temperatures (0.33¿±¿0.02 h-1 and 0.34¿±¿0.03 h-1, respectively), DNA microarray analyses revealed that the CtsR or HrcA deficient strains displayed altered transcription patterns of genes encoding functions involved in transport and binding of sugars and other compounds, primary metabolism, transcription regulation, capsular polysaccharide biosynthesis, as well as fatty acid metabolism. These transcriptional signatures enabled the refinement of the gene repertoire that is directly or indirectly controlled by CtsR and HrcA of L. plantarum. Deletion of both regulators, elicited transcriptional changes of a large variety of additional genes in a temperature-dependent manner, including genes encoding functions involved in cell-envelope remodeling. Moreover, phenotypic assays revealed that both transcription regulators contribute to regulation of resistance to hydrogen peroxide stress. The integration of these results allowed the reconstruction of CtsR and HrcA regulatory networks in L. plantarum, highlighting the significant intertwinement of class I and III stress regulons. Conclusions - Taken together, our results enabled the refinement of the CtsR and HrcA regulatory networks in L. plantarum, illustrating the complex nature of adaptive stress responses in this bacterium en application/pdf https://research.wur.nl/en/publications/transcriptome-signatures-of-class-i-and-iii-stress-response-dereg 10.1186/1475-2859-12-112 https://edepot.wur.nl/283796 bacillus-subtilis comparative genomics gastrointestinal-tract gram-positive bacteria heat-shock response helicobacter-pylori lactic-acid bacteria listeria-monocytogenes low gc streptococcus-pneumoniae Wageningen University & Research
institution WUR NL
collection DSpace
country Países bajos
countrycode NL
component Bibliográfico
access En linea
databasecode dig-wur-nl
tag biblioteca
region Europa del Oeste
libraryname WUR Library Netherlands
language English
topic bacillus-subtilis
comparative genomics
gastrointestinal-tract
gram-positive bacteria
heat-shock response
helicobacter-pylori
lactic-acid bacteria
listeria-monocytogenes
low gc
streptococcus-pneumoniae
bacillus-subtilis
comparative genomics
gastrointestinal-tract
gram-positive bacteria
heat-shock response
helicobacter-pylori
lactic-acid bacteria
listeria-monocytogenes
low gc
streptococcus-pneumoniae
spellingShingle bacillus-subtilis
comparative genomics
gastrointestinal-tract
gram-positive bacteria
heat-shock response
helicobacter-pylori
lactic-acid bacteria
listeria-monocytogenes
low gc
streptococcus-pneumoniae
bacillus-subtilis
comparative genomics
gastrointestinal-tract
gram-positive bacteria
heat-shock response
helicobacter-pylori
lactic-acid bacteria
listeria-monocytogenes
low gc
streptococcus-pneumoniae
van Bokhorst-van de Veen, H.
Bongers, R.S.
Wels, M.
Bron, P.A.
Kleerebezem, M.
Transcriptome signatures of class I and III stress response deregulation in Lactobacillus plantarum reveal pleiotropic adaptation
description Background - To cope with environmental challenges bacteria possess sophisticated defense mechanisms that involve stress-induced adaptive responses. The canonical stress regulators CtsR and HrcA play a central role in the adaptations to a plethora of stresses in a variety of organisms. Here, we determined the CtsR and HrcA regulons of the lactic acid bacterium Lactobacillus plantarum WCFS1 grown under reference (28°C) and elevated (40°C) temperatures, using ctsR, hrcA, and ctsR-hrcA deletion mutants. Results - While the maximum specific growth rates of the mutants and the parental strain were similar at both temperatures (0.33¿±¿0.02 h-1 and 0.34¿±¿0.03 h-1, respectively), DNA microarray analyses revealed that the CtsR or HrcA deficient strains displayed altered transcription patterns of genes encoding functions involved in transport and binding of sugars and other compounds, primary metabolism, transcription regulation, capsular polysaccharide biosynthesis, as well as fatty acid metabolism. These transcriptional signatures enabled the refinement of the gene repertoire that is directly or indirectly controlled by CtsR and HrcA of L. plantarum. Deletion of both regulators, elicited transcriptional changes of a large variety of additional genes in a temperature-dependent manner, including genes encoding functions involved in cell-envelope remodeling. Moreover, phenotypic assays revealed that both transcription regulators contribute to regulation of resistance to hydrogen peroxide stress. The integration of these results allowed the reconstruction of CtsR and HrcA regulatory networks in L. plantarum, highlighting the significant intertwinement of class I and III stress regulons. Conclusions - Taken together, our results enabled the refinement of the CtsR and HrcA regulatory networks in L. plantarum, illustrating the complex nature of adaptive stress responses in this bacterium
format Article/Letter to editor
topic_facet bacillus-subtilis
comparative genomics
gastrointestinal-tract
gram-positive bacteria
heat-shock response
helicobacter-pylori
lactic-acid bacteria
listeria-monocytogenes
low gc
streptococcus-pneumoniae
author van Bokhorst-van de Veen, H.
Bongers, R.S.
Wels, M.
Bron, P.A.
Kleerebezem, M.
author_facet van Bokhorst-van de Veen, H.
Bongers, R.S.
Wels, M.
Bron, P.A.
Kleerebezem, M.
author_sort van Bokhorst-van de Veen, H.
title Transcriptome signatures of class I and III stress response deregulation in Lactobacillus plantarum reveal pleiotropic adaptation
title_short Transcriptome signatures of class I and III stress response deregulation in Lactobacillus plantarum reveal pleiotropic adaptation
title_full Transcriptome signatures of class I and III stress response deregulation in Lactobacillus plantarum reveal pleiotropic adaptation
title_fullStr Transcriptome signatures of class I and III stress response deregulation in Lactobacillus plantarum reveal pleiotropic adaptation
title_full_unstemmed Transcriptome signatures of class I and III stress response deregulation in Lactobacillus plantarum reveal pleiotropic adaptation
title_sort transcriptome signatures of class i and iii stress response deregulation in lactobacillus plantarum reveal pleiotropic adaptation
url https://research.wur.nl/en/publications/transcriptome-signatures-of-class-i-and-iii-stress-response-dereg
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AT welsm transcriptomesignaturesofclassiandiiistressresponsederegulationinlactobacillusplantarumrevealpleiotropicadaptation
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AT kleerebezemm transcriptomesignaturesofclassiandiiistressresponsederegulationinlactobacillusplantarumrevealpleiotropicadaptation
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