Mapping of resistance to corn borers in a MAGIC population of maize

Background: Corn borers constitute an important pest of maize around the world; in particular Sesamia nonagrioides Lefèbvre, named Mediterranean corn borer (MCB), causes important losses in Southern Europe. Methods of selection can be combined with transgenic approaches to increase the efficiency and durability of the resistance to corn borers. Previous studies of the genetic factors involved in resistance to MCB have been carried out using bi-parental populations that have low resolution or using association inbred panels that have a low power to detect rare alleles. We developed a Multi-parent Advanced Generation InterCrosses (MAGIC) population to map with high resolution the genetic determinants of resistance to MCB. Results: We detected multiple single nucleotide polymorphisms (SNPs) of low effect associated with resistance to stalk tunneling by MCB. We dissected a wide region related to stalk tunneling in multiple studies into three smaller regions (at ~ 150, ~ 155, and ~ 165 Mb in chromosome 6) that closely overlap with regions associated with cell wall composition. We also detected regions associated with kernel resistance and agronomic traits, although the colocalization of significant regions between traits was very low. This indicates that it is possible the concurrent improvement of resistance and agronomic traits. Conclusions: We developed a mapping population which allowed a finer dissection of the genetics of maize resistance to corn borers and a solid nomination of candidate genes based on functional information. The population, given its large variability, was also adequate to map multiple traits and study the relationship between them.

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Main Authors: Jiménez Galindo, José Cruz, Malvar, Rosa Ana, Butrón, Ana, Santiago, Rogelio, Samayoa, Luis Fernando, Caicedo Villafuerte, Marlon Brainer, Ordás, Bernardo
Format: Journal articles biblioteca
Language:English
Published: Mocache, EC: INIAP, Estación Experimental Tropical Pichilingue, 2019 2019-10-17
Subjects:MAIZE, MEDITERRANEAN CORN BORER, SESAMIA NONAGRIOIDES, RESISTANCE, QUANTITATIVE TRAIT LOCI, GENOME WIDE ASSOCIATION ANALYSIS (GWAS),
Online Access:http://repositorio.iniap.gob.ec/handle/41000/5500
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spelling dig-iniap-41000-55002023-12-04T00:43:00Z Mapping of resistance to corn borers in a MAGIC population of maize BMC Plant Biology Jiménez Galindo, José Cruz Malvar, Rosa Ana Butrón, Ana Santiago, Rogelio Samayoa, Luis Fernando Caicedo Villafuerte, Marlon Brainer Ordás, Bernardo MAIZE MEDITERRANEAN CORN BORER SESAMIA NONAGRIOIDES RESISTANCE QUANTITATIVE TRAIT LOCI GENOME WIDE ASSOCIATION ANALYSIS (GWAS) Background: Corn borers constitute an important pest of maize around the world; in particular Sesamia nonagrioides Lefèbvre, named Mediterranean corn borer (MCB), causes important losses in Southern Europe. Methods of selection can be combined with transgenic approaches to increase the efficiency and durability of the resistance to corn borers. Previous studies of the genetic factors involved in resistance to MCB have been carried out using bi-parental populations that have low resolution or using association inbred panels that have a low power to detect rare alleles. We developed a Multi-parent Advanced Generation InterCrosses (MAGIC) population to map with high resolution the genetic determinants of resistance to MCB. Results: We detected multiple single nucleotide polymorphisms (SNPs) of low effect associated with resistance to stalk tunneling by MCB. We dissected a wide region related to stalk tunneling in multiple studies into three smaller regions (at ~ 150, ~ 155, and ~ 165 Mb in chromosome 6) that closely overlap with regions associated with cell wall composition. We also detected regions associated with kernel resistance and agronomic traits, although the colocalization of significant regions between traits was very low. This indicates that it is possible the concurrent improvement of resistance and agronomic traits. Conclusions: We developed a mapping population which allowed a finer dissection of the genetics of maize resistance to corn borers and a solid nomination of candidate genes based on functional information. The population, given its large variability, was also adequate to map multiple traits and study the relationship between them. 2020-04-29T15:05:41Z 2020-04-29T15:05:41Z 2019-10-17 Revista Artículo 1471-2229 *EC-INIAP-BEETP-MBY. Mocache (BMC Plant Biology (2019) 19:431) http://repositorio.iniap.gob.ec/handle/41000/5500 en Atribución-NoComercial-SinDerivadas 3.0 Ecuador http://creativecommons.org/licenses/by-nc-nd/3.0/ec/ P. 17 application/pdf E. E. Tropical Pichilingue Mocache, EC: INIAP, Estación Experimental Tropical Pichilingue, 2019
institution INIAP
collection DSpace
country Ecuador
countrycode EC
component Bibliográfico
access En linea
databasecode dig-iniap
tag biblioteca
region America del Sur
libraryname Biblioteca INIAP
language English
topic MAIZE
MEDITERRANEAN CORN BORER
SESAMIA NONAGRIOIDES
RESISTANCE
QUANTITATIVE TRAIT LOCI
GENOME WIDE ASSOCIATION ANALYSIS (GWAS)
MAIZE
MEDITERRANEAN CORN BORER
SESAMIA NONAGRIOIDES
RESISTANCE
QUANTITATIVE TRAIT LOCI
GENOME WIDE ASSOCIATION ANALYSIS (GWAS)
spellingShingle MAIZE
MEDITERRANEAN CORN BORER
SESAMIA NONAGRIOIDES
RESISTANCE
QUANTITATIVE TRAIT LOCI
GENOME WIDE ASSOCIATION ANALYSIS (GWAS)
MAIZE
MEDITERRANEAN CORN BORER
SESAMIA NONAGRIOIDES
RESISTANCE
QUANTITATIVE TRAIT LOCI
GENOME WIDE ASSOCIATION ANALYSIS (GWAS)
Jiménez Galindo, José Cruz
Malvar, Rosa Ana
Butrón, Ana
Santiago, Rogelio
Samayoa, Luis Fernando
Caicedo Villafuerte, Marlon Brainer
Ordás, Bernardo
Mapping of resistance to corn borers in a MAGIC population of maize
description Background: Corn borers constitute an important pest of maize around the world; in particular Sesamia nonagrioides Lefèbvre, named Mediterranean corn borer (MCB), causes important losses in Southern Europe. Methods of selection can be combined with transgenic approaches to increase the efficiency and durability of the resistance to corn borers. Previous studies of the genetic factors involved in resistance to MCB have been carried out using bi-parental populations that have low resolution or using association inbred panels that have a low power to detect rare alleles. We developed a Multi-parent Advanced Generation InterCrosses (MAGIC) population to map with high resolution the genetic determinants of resistance to MCB. Results: We detected multiple single nucleotide polymorphisms (SNPs) of low effect associated with resistance to stalk tunneling by MCB. We dissected a wide region related to stalk tunneling in multiple studies into three smaller regions (at ~ 150, ~ 155, and ~ 165 Mb in chromosome 6) that closely overlap with regions associated with cell wall composition. We also detected regions associated with kernel resistance and agronomic traits, although the colocalization of significant regions between traits was very low. This indicates that it is possible the concurrent improvement of resistance and agronomic traits. Conclusions: We developed a mapping population which allowed a finer dissection of the genetics of maize resistance to corn borers and a solid nomination of candidate genes based on functional information. The population, given its large variability, was also adequate to map multiple traits and study the relationship between them.
format Revista
topic_facet MAIZE
MEDITERRANEAN CORN BORER
SESAMIA NONAGRIOIDES
RESISTANCE
QUANTITATIVE TRAIT LOCI
GENOME WIDE ASSOCIATION ANALYSIS (GWAS)
author Jiménez Galindo, José Cruz
Malvar, Rosa Ana
Butrón, Ana
Santiago, Rogelio
Samayoa, Luis Fernando
Caicedo Villafuerte, Marlon Brainer
Ordás, Bernardo
author_facet Jiménez Galindo, José Cruz
Malvar, Rosa Ana
Butrón, Ana
Santiago, Rogelio
Samayoa, Luis Fernando
Caicedo Villafuerte, Marlon Brainer
Ordás, Bernardo
author_sort Jiménez Galindo, José Cruz
title Mapping of resistance to corn borers in a MAGIC population of maize
title_short Mapping of resistance to corn borers in a MAGIC population of maize
title_full Mapping of resistance to corn borers in a MAGIC population of maize
title_fullStr Mapping of resistance to corn borers in a MAGIC population of maize
title_full_unstemmed Mapping of resistance to corn borers in a MAGIC population of maize
title_sort mapping of resistance to corn borers in a magic population of maize
publisher Mocache, EC: INIAP, Estación Experimental Tropical Pichilingue, 2019
publishDate 2019-10-17
url http://repositorio.iniap.gob.ec/handle/41000/5500
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