Integrated Molecular and Morphological Studies of the Daucus guttatus Complex (Apiaceae)

In a previous study using 94 nuclear orthologs, we reported the species status of the Daucus guttatus complex to be unresolved, partitioned into three clades. In the present study, a subset of ten of these 94 orthologs was used to infer the phylogeny of the D. guttatus complex and related species. A near parallel set of accessions, planted in a common garden, was used for morphological analyses. The molecular trees are highly resolved for most of the clades, grouping accessions of the D. guttatus complex into four clades. Bayesian concordance analysis and a coalescent approach gave slightly different topologies. Morphological data likewise support four taxa in the complex. Moreover, herbarium research from a companion study informs nomenclature for taxa of the complex. We identify these four clades as D. bicolor, D. conchitae, D. guttatus, and D. setulosus; internested in or among these segregates are the phenetically distinctive species D. glochidiatus, D. involucratus, D. littoralis, and D. pusillus. Our research redefines species variation in the D. guttatus complex, clarifies species names, interspecific relationships, confirms a useful subset of nuclear orthologs for studies of dominant topologies of Daucus, and discovers morphological characters allowing proper identification of the four species of the D. guttatus complex and related species.

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Main Authors: Arbizu Berrocal, Carlos Irvin, Simon, Philipp W., Martínez Flores, Fernando, Ruess, Holly, Crespo, Manuel B., Spooner, David M.
Format: info:eu-repo/semantics/article biblioteca
Language:eng
Published: BioOne
Subjects:Carrot species, Germplasm, Nuclear orthologs, Phenetics, Biotecnología agrícola, Biotecnología alimentaria,
Online Access:http://repositorio.inia.gob.pe/handle/20.500.12955/1130
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spelling dig-inia-pe-20.500.12955-11302022-11-21T20:35:08Z Integrated Molecular and Morphological Studies of the Daucus guttatus Complex (Apiaceae) Arbizu Berrocal, Carlos Irvin Simon, Philipp W. Martínez Flores, Fernando Ruess, Holly Crespo, Manuel B. Spooner, David M. Carrot species Germplasm Nuclear orthologs Phenetics Biotecnología agrícola, Biotecnología alimentaria In a previous study using 94 nuclear orthologs, we reported the species status of the Daucus guttatus complex to be unresolved, partitioned into three clades. In the present study, a subset of ten of these 94 orthologs was used to infer the phylogeny of the D. guttatus complex and related species. A near parallel set of accessions, planted in a common garden, was used for morphological analyses. The molecular trees are highly resolved for most of the clades, grouping accessions of the D. guttatus complex into four clades. Bayesian concordance analysis and a coalescent approach gave slightly different topologies. Morphological data likewise support four taxa in the complex. Moreover, herbarium research from a companion study informs nomenclature for taxa of the complex. We identify these four clades as D. bicolor, D. conchitae, D. guttatus, and D. setulosus; internested in or among these segregates are the phenetically distinctive species D. glochidiatus, D. involucratus, D. littoralis, and D. pusillus. Our research redefines species variation in the D. guttatus complex, clarifies species names, interspecific relationships, confirms a useful subset of nuclear orthologs for studies of dominant topologies of Daucus, and discovers morphological characters allowing proper identification of the four species of the D. guttatus complex and related species. 2016-06-28 info:eu-repo/semantics/article http://repositorio.inia.gob.pe/handle/20.500.12955/1130 eng Systematic Botany (2016), 41(2): pp. 479–492 https://doi.org/10.1600/036364416X691948 info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ application/pdf BioOne Instituto Nacional de Innovación Agraria Repositorio Institucional - INIA
institution INIA PE
collection DSpace
country Perú
countrycode PE
component Bibliográfico
access En linea
databasecode dig-inia-pe
tag biblioteca
region America del Sur
libraryname Biblioteca del INIA Perú
language eng
topic Carrot species
Germplasm
Nuclear orthologs
Phenetics
Biotecnología agrícola, Biotecnología alimentaria
Carrot species
Germplasm
Nuclear orthologs
Phenetics
Biotecnología agrícola, Biotecnología alimentaria
spellingShingle Carrot species
Germplasm
Nuclear orthologs
Phenetics
Biotecnología agrícola, Biotecnología alimentaria
Carrot species
Germplasm
Nuclear orthologs
Phenetics
Biotecnología agrícola, Biotecnología alimentaria
Arbizu Berrocal, Carlos Irvin
Simon, Philipp W.
Martínez Flores, Fernando
Ruess, Holly
Crespo, Manuel B.
Spooner, David M.
Integrated Molecular and Morphological Studies of the Daucus guttatus Complex (Apiaceae)
description In a previous study using 94 nuclear orthologs, we reported the species status of the Daucus guttatus complex to be unresolved, partitioned into three clades. In the present study, a subset of ten of these 94 orthologs was used to infer the phylogeny of the D. guttatus complex and related species. A near parallel set of accessions, planted in a common garden, was used for morphological analyses. The molecular trees are highly resolved for most of the clades, grouping accessions of the D. guttatus complex into four clades. Bayesian concordance analysis and a coalescent approach gave slightly different topologies. Morphological data likewise support four taxa in the complex. Moreover, herbarium research from a companion study informs nomenclature for taxa of the complex. We identify these four clades as D. bicolor, D. conchitae, D. guttatus, and D. setulosus; internested in or among these segregates are the phenetically distinctive species D. glochidiatus, D. involucratus, D. littoralis, and D. pusillus. Our research redefines species variation in the D. guttatus complex, clarifies species names, interspecific relationships, confirms a useful subset of nuclear orthologs for studies of dominant topologies of Daucus, and discovers morphological characters allowing proper identification of the four species of the D. guttatus complex and related species.
format info:eu-repo/semantics/article
topic_facet Carrot species
Germplasm
Nuclear orthologs
Phenetics
Biotecnología agrícola, Biotecnología alimentaria
author Arbizu Berrocal, Carlos Irvin
Simon, Philipp W.
Martínez Flores, Fernando
Ruess, Holly
Crespo, Manuel B.
Spooner, David M.
author_facet Arbizu Berrocal, Carlos Irvin
Simon, Philipp W.
Martínez Flores, Fernando
Ruess, Holly
Crespo, Manuel B.
Spooner, David M.
author_sort Arbizu Berrocal, Carlos Irvin
title Integrated Molecular and Morphological Studies of the Daucus guttatus Complex (Apiaceae)
title_short Integrated Molecular and Morphological Studies of the Daucus guttatus Complex (Apiaceae)
title_full Integrated Molecular and Morphological Studies of the Daucus guttatus Complex (Apiaceae)
title_fullStr Integrated Molecular and Morphological Studies of the Daucus guttatus Complex (Apiaceae)
title_full_unstemmed Integrated Molecular and Morphological Studies of the Daucus guttatus Complex (Apiaceae)
title_sort integrated molecular and morphological studies of the daucus guttatus complex (apiaceae)
publisher BioOne
url http://repositorio.inia.gob.pe/handle/20.500.12955/1130
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