Shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants
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2024-05-27
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dig-inia-es-10261-3612322024-06-21T20:36:27Z Shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants Kates, Heather O'Meara, Brian C. LaFrance, Raphael Stull, Gregory W. James, Euan K. Liu, Shui-Yin Tian, Qin Yi, Ting-Shuang Conde, Daniel Kirst, Matias Ané, Jean-Michel Soltis, Douglas Guralnick, Robert Soltis, Pamela Folk, Ryan University of Florida Kates, Heather [0000-0001-8490-2201] O'Meara, Brian C. [0000-0002-0337-5997] Stull, Gregory W. [0000-0002-2733-4823] James, Euan K. [0000-0001-7969-6570] Liu, Shui-Yin [0000-0002-8674-7097] Tian, Qin [0000-0002-7939-5329] Yi, Ting-Shuang [0000-0001-7093-9564] Conde, Daniel [0000-0001-8362-4190] Kirst, Matias [0000-0002-8186-3945] Ané, Jean-Michel [0000-0002-3128-9439] Soltis, Douglas [0000-0001-8638-4137] Guralnick, Robert [0000-0001-6682-1504] Soltis, Pamela [0000-0001-9310-8659] Folk, Ryan [0000-0002-5333-9273] 11 Pág. Root nodule symbiosis (RNS) is a complex trait that enables plants to access atmospheric nitrogen converted into usable forms through a mutualistic relationship with soil bacteria. Pinpointing the evolutionary origins of RNS is critical for understanding its genetic basis, but building this evolutionary context is complicated by data limitations and the intermittent presence of RNS in a single clade of ca. 30,000 species of flowering plants, i.e., the nitrogen-fixing clade (NFC). We developed the most extensive de novo phylogeny for the NFC and an RNS trait database to reconstruct the evolution of RNS. Our analysis identifies evolutionary rate heterogeneity associated with a two-step process: An ancestral precursor state transitioned to a more labile state from which RNS was rapidly gained at multiple points in the NFC. We illustrate how a two-step process could explain multiple independent gains and losses of RNS, contrary to recent hypotheses suggesting one gain and numerous losses, and suggest a broader phylogenetic and genetic scope may be required for genome-phenome mapping. This work was supported by DOE grant DE-SC0018247 to M.K., R.G., P.S., and D.S. and a UFBI grant (University of Florida). We thank Katharina Pawlowski for reviewing our scoring of actinorhizal symbiosis and for related discussions. We thank Colin Hughes and other members of the Legume Phylogeny Working Group for reviewing and helping to resolve taxonomy issues in Leguminosae. We thank Mark Whitten, Kelly Balmant, Chris Dervinis, Joshua Dieringer, and Henry Schmidt for help with specimen sampling. Peer reviewed 2024-06-21T10:20:49Z 2024-06-21T10:20:49Z 2024-05-27 artículo Nature Communications 15(1): 4262 (2024) http://hdl.handle.net/10261/361232 10.1038/s41467-024-48036-3 2041-1723 38802387 2-s2.0-85190443823 https://api.elsevier.com/content/abstract/scopus_id/85190443823 en Centro de Biotecnología y Genómica de Plantas (CBGP) Publisher's version https://doi.org/10.1038/s41467-024-48036-3 Sí open application/pdf Nature Publishing Group |
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11 Pág. |
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University of Florida |
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University of Florida Kates, Heather O'Meara, Brian C. LaFrance, Raphael Stull, Gregory W. James, Euan K. Liu, Shui-Yin Tian, Qin Yi, Ting-Shuang Conde, Daniel Kirst, Matias Ané, Jean-Michel Soltis, Douglas Guralnick, Robert Soltis, Pamela Folk, Ryan |
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artículo |
| author |
Kates, Heather O'Meara, Brian C. LaFrance, Raphael Stull, Gregory W. James, Euan K. Liu, Shui-Yin Tian, Qin Yi, Ting-Shuang Conde, Daniel Kirst, Matias Ané, Jean-Michel Soltis, Douglas Guralnick, Robert Soltis, Pamela Folk, Ryan |
| spellingShingle |
Kates, Heather O'Meara, Brian C. LaFrance, Raphael Stull, Gregory W. James, Euan K. Liu, Shui-Yin Tian, Qin Yi, Ting-Shuang Conde, Daniel Kirst, Matias Ané, Jean-Michel Soltis, Douglas Guralnick, Robert Soltis, Pamela Folk, Ryan Shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants |
| author_sort |
Kates, Heather |
| title |
Shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants |
| title_short |
Shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants |
| title_full |
Shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants |
| title_fullStr |
Shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants |
| title_full_unstemmed |
Shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants |
| title_sort |
shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants |
| publisher |
Nature Publishing Group |
| publishDate |
2024-05-27 |
| url |
http://hdl.handle.net/10261/361232 https://api.elsevier.com/content/abstract/scopus_id/85190443823 |
| work_keys_str_mv |
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