The Resilient Dairy Genome Project-A general overview of methods and objectives related to feed efficiency and methane emissions
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2024-03
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| Subjects: | Dairy cattle breeding, Dry matter intake, Feed efficiency, Methane, Resilience, |
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Dairy cattle breeding Dry matter intake Feed efficiency Methane Resilience Dairy cattle breeding Dry matter intake Feed efficiency Methane Resilience |
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Dairy cattle breeding Dry matter intake Feed efficiency Methane Resilience Dairy cattle breeding Dry matter intake Feed efficiency Methane Resilience van Staaveren, Nienke Rojas de Oliveira, Hinayah Houlahan, Kerry Chud, Tatiane Oliveira, Gerson Hailemariam, Dagnachew Kistemaker, Gerrit Miglior, Filippo Plastow, Graham Schenkel, Flavio S. Cerri, Ronaldo Sirard, M. A. Stothard, Paul Pryce, J. E. Butty, Adrien Stratz, Patrick Abdalla, Emhimad Segelke, Dierck Stamer, Eckhard Thaller, Georg Lassen, Jan Manzanilla-Pech, Coralia Stephansen, Rasmus Charfeddine, N. García-Rodríguez, Aser González Recio, Oscar López-Paredes, Javier Baldwin, Ransom Burchard, Javier Parker Gaddis, Kristen L. Koltes, James Peñagaricano, Francisco Santos, José Eduardo Tempelman, Robert VandeHaar, Michael Weigel, Kent White, Heather Baes, Christine F. The Resilient Dairy Genome Project-A general overview of methods and objectives related to feed efficiency and methane emissions |
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13 Pág. |
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van Staaveren, Nienke [0000-0003-3401-5553] |
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van Staaveren, Nienke [0000-0003-3401-5553] van Staaveren, Nienke Rojas de Oliveira, Hinayah Houlahan, Kerry Chud, Tatiane Oliveira, Gerson Hailemariam, Dagnachew Kistemaker, Gerrit Miglior, Filippo Plastow, Graham Schenkel, Flavio S. Cerri, Ronaldo Sirard, M. A. Stothard, Paul Pryce, J. E. Butty, Adrien Stratz, Patrick Abdalla, Emhimad Segelke, Dierck Stamer, Eckhard Thaller, Georg Lassen, Jan Manzanilla-Pech, Coralia Stephansen, Rasmus Charfeddine, N. García-Rodríguez, Aser González Recio, Oscar López-Paredes, Javier Baldwin, Ransom Burchard, Javier Parker Gaddis, Kristen L. Koltes, James Peñagaricano, Francisco Santos, José Eduardo Tempelman, Robert VandeHaar, Michael Weigel, Kent White, Heather Baes, Christine F. |
| format |
artículo |
| topic_facet |
Dairy cattle breeding Dry matter intake Feed efficiency Methane Resilience |
| author |
van Staaveren, Nienke Rojas de Oliveira, Hinayah Houlahan, Kerry Chud, Tatiane Oliveira, Gerson Hailemariam, Dagnachew Kistemaker, Gerrit Miglior, Filippo Plastow, Graham Schenkel, Flavio S. Cerri, Ronaldo Sirard, M. A. Stothard, Paul Pryce, J. E. Butty, Adrien Stratz, Patrick Abdalla, Emhimad Segelke, Dierck Stamer, Eckhard Thaller, Georg Lassen, Jan Manzanilla-Pech, Coralia Stephansen, Rasmus Charfeddine, N. García-Rodríguez, Aser González Recio, Oscar López-Paredes, Javier Baldwin, Ransom Burchard, Javier Parker Gaddis, Kristen L. Koltes, James Peñagaricano, Francisco Santos, José Eduardo Tempelman, Robert VandeHaar, Michael Weigel, Kent White, Heather Baes, Christine F. |
| author_sort |
van Staaveren, Nienke |
| title |
The Resilient Dairy Genome Project-A general overview of methods and objectives related to feed efficiency and methane emissions |
| title_short |
The Resilient Dairy Genome Project-A general overview of methods and objectives related to feed efficiency and methane emissions |
| title_full |
The Resilient Dairy Genome Project-A general overview of methods and objectives related to feed efficiency and methane emissions |
| title_fullStr |
The Resilient Dairy Genome Project-A general overview of methods and objectives related to feed efficiency and methane emissions |
| title_full_unstemmed |
The Resilient Dairy Genome Project-A general overview of methods and objectives related to feed efficiency and methane emissions |
| title_sort |
resilient dairy genome project-a general overview of methods and objectives related to feed efficiency and methane emissions |
| publisher |
Elsevier |
| publishDate |
2024-03 |
| url |
http://hdl.handle.net/10261/356912 https://api.elsevier.com/content/abstract/scopus_id/85180113500 |
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1816136647760150528 |
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dig-inia-es-10261-3569122024-11-03T21:36:15Z The Resilient Dairy Genome Project-A general overview of methods and objectives related to feed efficiency and methane emissions van Staaveren, Nienke Rojas de Oliveira, Hinayah Houlahan, Kerry Chud, Tatiane Oliveira, Gerson Hailemariam, Dagnachew Kistemaker, Gerrit Miglior, Filippo Plastow, Graham Schenkel, Flavio S. Cerri, Ronaldo Sirard, M. A. Stothard, Paul Pryce, J. E. Butty, Adrien Stratz, Patrick Abdalla, Emhimad Segelke, Dierck Stamer, Eckhard Thaller, Georg Lassen, Jan Manzanilla-Pech, Coralia Stephansen, Rasmus Charfeddine, N. García-Rodríguez, Aser González Recio, Oscar López-Paredes, Javier Baldwin, Ransom Burchard, Javier Parker Gaddis, Kristen L. Koltes, James Peñagaricano, Francisco Santos, José Eduardo Tempelman, Robert VandeHaar, Michael Weigel, Kent White, Heather Baes, Christine F. van Staaveren, Nienke [0000-0003-3401-5553] Rojas de Oliveira, Hinayah [0000-0002-0355-8902] Houlahan, Kerry [0000-0003-4372-9937] Chud, Tatiane [0000-0001-7559-1165] Oliveira, Gerson [0000-0002-4228-2910] Hailemariam, Dagnachew [0000-0002-0030-7729] Kistemaker, Gerrit [0009-0006-7595-6607] Miglior, Filippo [0000-0003-2345-8842] Plastow, Graham [0000-0002-3774-3110] Schenkel, Flavio S. [0000-0001-8700-0633] Cerri, Ronaldo [0000-0002-8169-8900] Sirard, M. A. [0000-0001-8667-6682] Stothard, Paul [0000-0003-4263-969X] Pryce, J. E. [0000-0002-1397-1282] Butty, Adrien [0000-0003-2320-8405] Abdalla, Emhimad [0000-0002-1607-3437] Segelke, Dierck [0000-0002-7351-530X] Stamer, Eckhard [0000-0002-1598-751X] Thaller, Georg [0009-0002-1971-9376] Lassen, Jan [0000-0002-1338-8644] Manzanilla-Pech, Coralia [0000-0003-1552-212X] Stephansen, Rasmus [0000-0001-9687-0833] Charfeddine, N. [0009-0003-8300-5180] García-Rodríguez, Aser [0000-0001-5519-6766] González Recio, Oscar [0000-0002-9106-4063] López-Paredes, Javier [0000-0003-1507-2595] Baldwin, Ransom [0000-0002-0753-4377] Burchard, Javier [0000-0002-6412-7647] Parker Gaddis, Kristen L. [0000-0003-1234-1075] Koltes, James [0000-0003-1897-5685] Peñagaricano, Francisco [0000-0001-6661-3991] Santos, José Eduardo [0000-0003-3403-1465] Tempelman, Robert [0000-0002-7833-6730] VandeHaar, Michael [0000-0002-8475-3493] Weigel, Kent [0000-0002-2391-6260] White, Heather [0000-0001-5449-2811] Baes, Christine F. [0000-0001-6614-8890] Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72] Dairy cattle breeding Dry matter intake Feed efficiency Methane Resilience 13 Pág. The Resilient Dairy Genome Project (RDGP) is an international large-scale applied research project that aims to generate genomic tools to breed more resilient dairy cows. In this context, improving feed efficiency and reducing greenhouse gases from dairy is a high priority. The inclusion of traits related to feed efficiency (e.g., dry matter intake [DMI]) or greenhouse gases (e.g., methane emissions [CH4]) relies on available genotypes as well as high quality phenotypes. Currently, 7 countries (i.e., Australia, Canada, Denmark, Germany, Spain, Switzerland, and United States) contribute with genotypes and phenotypes including DMI and CH4. However, combining data are challenging due to differences in recording protocols, measurement technology, genotyping, and animal management across sources. In this study, we provide an overview of how the RDGP partners address these issues to advance international collaboration to generate genomic tools for resilient dairy. Specifically, we describe the current state of the RDGP database, data collection protocols in each country, and the strategies used for managing the shared data. As of February 2022, the database contains 1,289,593 DMI records from 12,687 cows and 17,403 CH4 records from 3,093 cows and continues to grow as countries upload new data over the coming years. No strong genomic differentiation between the populations was identified in this study, which may be beneficial for eventual across-country genomic predictions. Moreover, our results reinforce the need to account for the heterogeneity in the DMI and CH4 phenotypes in genomic analysis. This study was part of the Resilient Dairy Genome Project (RDGP). We gratefully acknowledge the funding and support from the Resilient Dairy Genome Project (http://www.resilientdairy.ca/funders-and-partners/) including Genome Canada (Ottawa, Canada), Genome Alberta (Calgary, Canada), Ontario Ministry of Economic Development, Job Creation and Trade (Toronto, Canada), Genome Quebec (Montreal, Canada), Genome British Columbia (Vancouver, Canada), Lactanet (Guelph, Canada), Dairy Farmers of Canada (Ottawa, Canada), Aarhus University (Aarhus, Denmark), The Council on Dairy Cattle Breeding (Bowie, MD), Qualitas AG (Zug, Switzerland), USDA–Agricultural Research Service (Beltsville, MD), Allflex Livestock Intelligence (Rahway, NJ), Afimilk Ltd. (Kibbutz Afikim, Israel), Nedap NV (Groenlo, the Netherlands), Illumina (Vancouver, Canada), Ontario Genomics Institute (Toronto, Canada), University of Guelph (Guelph, Canada), University of Alberta (Edmonton, Canada), Université Laval (Quebec, Canada), University of British Columbia (Vancouver, Canada), McGill University (Montreal, Canada), Agriculture Research Department of Jobs, Precincts and Regions, La Trobe University (Melbourne Victoria, Australia), Instituto Nacional de Investigacion y Technologia Agraria y Alimentaria (Madrid, Spain), Confederación de Asociaciones de Frisona Española (Madrid, Spain), Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (Paris, France), Vereinigte Informationssysteme Tierhaltung (Verden/Aller, Germany), University of Wisconsin–Madison (Madison, WI), University of Florida (Gainesville, FL), Purdue University (West Lafayette, IN), University of Georgia (Athens, GA), Iowa State University (Ames, IA), Michigan State University (East Lansing, MI), University of Calgary (Calgary, Canada), University of Prince Edward Island (Charlottetown, Canada), Alberta Agriculture and Forestry (Edmonton, Canada), Agriculture and Agri-Food Canada (Ottawa, Canada), Freie Universität Berlin (Berlin, Germany), São Paulo State University (Botucatu SP, Brazil), GenTORE Project (Paris, France), Semex (Guelph, Canada), Foundation for Food and Agriculture Research (FFAR, Washington, DC), Ministry of Agriculture Food and Rural Affairs (Guelph, Canada), Ontario Ministry of Research and Innovation (Toronto, Canada), ETH Zurich, Animal Nutrition Group (Zurich, Switzerland), Agroscope Posieux (Posieux, Switzerland), University of Kiel (Kiel, Germany). We also want to express our heartfelt thank you to all people who have assisted in the data collection on these farms. Dr. Christine Baes also gratefully acknowledges support from the Natural Sciences and Engineering Research Council of Canada, Canada Research Chair and Discovery programs. This research was supported by a contribution from the Dairy Research Cluster 3 (Lactanet and Agriculture and Agri-Food Canada) under the Canadian Agricultural Partnership AgriScience Program. As per the research agreement, researchers maintain independence in conducting their studies, own their data, and report the outcomes regardless of the results. The decision to publish the findings rests solely with the researchers. The authors acknowledge that C. Baes is a senior editor for the Journal of Dairy Science. The authors have not stated any conflicts of interest. Peer reviewed 2024-05-14T10:39:29Z 2024-05-14T10:39:29Z 2024-03 artículo http://purl.org/coar/resource_type/c_6501 Journal of Dairy Science 107(3): 1510-1522 (2024) 0022-0302 http://hdl.handle.net/10261/356912 10.3168/jds.2022-22951 1525-3198 37690718 2-s2.0-85180113500 https://api.elsevier.com/content/abstract/scopus_id/85180113500 en Department of Animal Breeding Publisher's version https://doi.org/10.3168/jds.2022-22951 Sí open application/pdf Elsevier |