Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine

Chloroplast microsatellites are becoming increasingly popular markers for population genetic studies in plants, but there has been little focus on their potential for demographic inference. In this work the utility of chloroplast microsatellites for the study of population expansions was explored. First, we investigated the power of mismatch distribution analysis and the FS test with coalescent simulations of different demographic scenarios. We then applied these methods to empirical data obtained for the Canary Island pine (Pinus canariensis). The results of the simulations showed that chloroplast microsatellites are sensitive to sudden population growth. The power of the FS test and accuracy of demographic parameter estimates, such as the time of expansion, were reduced proportionally to the level of homoplasy within the data. The analysis of Canary Island pine chloroplast microsatellite data indicated population expansions for almost all sample localities. Demographic expansions at the island level can be explained by the colonization of the archipelago by the pine, while population expansions of different ages in different localities within an island could be the result of local extinctions and recolonization dynamics. Comparable mitochondrial DNA sequence data from a parasite of P. canariensis, the weevil Brachyderes rugatus, supports this scenario, suggesting a key role for volcanism in the evolution of pine forest communities in the Canary Islands. © 2006 The Authors.

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Main Authors: Navascués, M., Vaxevanidou, Z., González-Martínez, S. C., Climent Maldonado, José María, Gil, L., Emerson, B. C.
Format: journal article biblioteca
Language:English
Published: Wiley 2006
Subjects:Canary Islands, Chloroplast microsatellite, Mismatch distribution, Pinus canariensis, Population expansion,
Online Access:http://hdl.handle.net/20.500.12792/5333
http://hdl.handle.net/10261/294051
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spelling dig-inia-es-10261-2940512023-02-20T10:34:48Z Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine Navascués, M. Vaxevanidou, Z. González-Martínez, S. C. Climent Maldonado, José María Gil, L. Emerson, B. C. Canary Islands Chloroplast microsatellite Mismatch distribution Pinus canariensis Population expansion Chloroplast microsatellites are becoming increasingly popular markers for population genetic studies in plants, but there has been little focus on their potential for demographic inference. In this work the utility of chloroplast microsatellites for the study of population expansions was explored. First, we investigated the power of mismatch distribution analysis and the FS test with coalescent simulations of different demographic scenarios. We then applied these methods to empirical data obtained for the Canary Island pine (Pinus canariensis). The results of the simulations showed that chloroplast microsatellites are sensitive to sudden population growth. The power of the FS test and accuracy of demographic parameter estimates, such as the time of expansion, were reduced proportionally to the level of homoplasy within the data. The analysis of Canary Island pine chloroplast microsatellite data indicated population expansions for almost all sample localities. Demographic expansions at the island level can be explained by the colonization of the archipelago by the pine, while population expansions of different ages in different localities within an island could be the result of local extinctions and recolonization dynamics. Comparable mitochondrial DNA sequence data from a parasite of P. canariensis, the weevil Brachyderes rugatus, supports this scenario, suggesting a key role for volcanism in the evolution of pine forest communities in the Canary Islands. © 2006 The Authors. 2023-02-20T10:34:48Z 2023-02-20T10:34:48Z 2006 journal article Molecular Ecology 15(10): 2691-2698 (2006) 0962-1083 http://hdl.handle.net/20.500.12792/5333 http://hdl.handle.net/10261/294051 10.1111/j.1365-294X.2006.02960.x 1365-294X en none Wiley
institution INIA ES
collection DSpace
country España
countrycode ES
component Bibliográfico
access En linea
databasecode dig-inia-es
tag biblioteca
region Europa del Sur
libraryname Biblioteca del INIA España
language English
topic Canary Islands
Chloroplast microsatellite
Mismatch distribution
Pinus canariensis
Population expansion
Canary Islands
Chloroplast microsatellite
Mismatch distribution
Pinus canariensis
Population expansion
spellingShingle Canary Islands
Chloroplast microsatellite
Mismatch distribution
Pinus canariensis
Population expansion
Canary Islands
Chloroplast microsatellite
Mismatch distribution
Pinus canariensis
Population expansion
Navascués, M.
Vaxevanidou, Z.
González-Martínez, S. C.
Climent Maldonado, José María
Gil, L.
Emerson, B. C.
Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine
description Chloroplast microsatellites are becoming increasingly popular markers for population genetic studies in plants, but there has been little focus on their potential for demographic inference. In this work the utility of chloroplast microsatellites for the study of population expansions was explored. First, we investigated the power of mismatch distribution analysis and the FS test with coalescent simulations of different demographic scenarios. We then applied these methods to empirical data obtained for the Canary Island pine (Pinus canariensis). The results of the simulations showed that chloroplast microsatellites are sensitive to sudden population growth. The power of the FS test and accuracy of demographic parameter estimates, such as the time of expansion, were reduced proportionally to the level of homoplasy within the data. The analysis of Canary Island pine chloroplast microsatellite data indicated population expansions for almost all sample localities. Demographic expansions at the island level can be explained by the colonization of the archipelago by the pine, while population expansions of different ages in different localities within an island could be the result of local extinctions and recolonization dynamics. Comparable mitochondrial DNA sequence data from a parasite of P. canariensis, the weevil Brachyderes rugatus, supports this scenario, suggesting a key role for volcanism in the evolution of pine forest communities in the Canary Islands. © 2006 The Authors.
format journal article
topic_facet Canary Islands
Chloroplast microsatellite
Mismatch distribution
Pinus canariensis
Population expansion
author Navascués, M.
Vaxevanidou, Z.
González-Martínez, S. C.
Climent Maldonado, José María
Gil, L.
Emerson, B. C.
author_facet Navascués, M.
Vaxevanidou, Z.
González-Martínez, S. C.
Climent Maldonado, José María
Gil, L.
Emerson, B. C.
author_sort Navascués, M.
title Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine
title_short Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine
title_full Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine
title_fullStr Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine
title_full_unstemmed Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine
title_sort chloroplast microsatellites reveal colonization and metapopulation dynamics in the canary island pine
publisher Wiley
publishDate 2006
url http://hdl.handle.net/20.500.12792/5333
http://hdl.handle.net/10261/294051
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