Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine
Chloroplast microsatellites are becoming increasingly popular markers for population genetic studies in plants, but there has been little focus on their potential for demographic inference. In this work the utility of chloroplast microsatellites for the study of population expansions was explored. First, we investigated the power of mismatch distribution analysis and the FS test with coalescent simulations of different demographic scenarios. We then applied these methods to empirical data obtained for the Canary Island pine (Pinus canariensis). The results of the simulations showed that chloroplast microsatellites are sensitive to sudden population growth. The power of the FS test and accuracy of demographic parameter estimates, such as the time of expansion, were reduced proportionally to the level of homoplasy within the data. The analysis of Canary Island pine chloroplast microsatellite data indicated population expansions for almost all sample localities. Demographic expansions at the island level can be explained by the colonization of the archipelago by the pine, while population expansions of different ages in different localities within an island could be the result of local extinctions and recolonization dynamics. Comparable mitochondrial DNA sequence data from a parasite of P. canariensis, the weevil Brachyderes rugatus, supports this scenario, suggesting a key role for volcanism in the evolution of pine forest communities in the Canary Islands. © 2006 The Authors.
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Format: | journal article biblioteca |
Language: | English |
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Wiley
2006
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Subjects: | Canary Islands, Chloroplast microsatellite, Mismatch distribution, Pinus canariensis, Population expansion, |
Online Access: | http://hdl.handle.net/20.500.12792/5333 http://hdl.handle.net/10261/294051 |
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dig-inia-es-10261-2940512023-02-20T10:34:48Z Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine Navascués, M. Vaxevanidou, Z. González-Martínez, S. C. Climent Maldonado, José María Gil, L. Emerson, B. C. Canary Islands Chloroplast microsatellite Mismatch distribution Pinus canariensis Population expansion Chloroplast microsatellites are becoming increasingly popular markers for population genetic studies in plants, but there has been little focus on their potential for demographic inference. In this work the utility of chloroplast microsatellites for the study of population expansions was explored. First, we investigated the power of mismatch distribution analysis and the FS test with coalescent simulations of different demographic scenarios. We then applied these methods to empirical data obtained for the Canary Island pine (Pinus canariensis). The results of the simulations showed that chloroplast microsatellites are sensitive to sudden population growth. The power of the FS test and accuracy of demographic parameter estimates, such as the time of expansion, were reduced proportionally to the level of homoplasy within the data. The analysis of Canary Island pine chloroplast microsatellite data indicated population expansions for almost all sample localities. Demographic expansions at the island level can be explained by the colonization of the archipelago by the pine, while population expansions of different ages in different localities within an island could be the result of local extinctions and recolonization dynamics. Comparable mitochondrial DNA sequence data from a parasite of P. canariensis, the weevil Brachyderes rugatus, supports this scenario, suggesting a key role for volcanism in the evolution of pine forest communities in the Canary Islands. © 2006 The Authors. 2023-02-20T10:34:48Z 2023-02-20T10:34:48Z 2006 journal article Molecular Ecology 15(10): 2691-2698 (2006) 0962-1083 http://hdl.handle.net/20.500.12792/5333 http://hdl.handle.net/10261/294051 10.1111/j.1365-294X.2006.02960.x 1365-294X en none Wiley |
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Canary Islands Chloroplast microsatellite Mismatch distribution Pinus canariensis Population expansion Canary Islands Chloroplast microsatellite Mismatch distribution Pinus canariensis Population expansion |
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Canary Islands Chloroplast microsatellite Mismatch distribution Pinus canariensis Population expansion Canary Islands Chloroplast microsatellite Mismatch distribution Pinus canariensis Population expansion Navascués, M. Vaxevanidou, Z. González-Martínez, S. C. Climent Maldonado, José María Gil, L. Emerson, B. C. Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine |
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Chloroplast microsatellites are becoming increasingly popular markers for population genetic studies in plants, but there has been little focus on their potential for demographic inference. In this work the utility of chloroplast microsatellites for the study of population expansions was explored. First, we investigated the power of mismatch distribution analysis and the FS test with coalescent simulations of different demographic scenarios. We then applied these methods to empirical data obtained for the Canary Island pine (Pinus canariensis). The results of the simulations showed that chloroplast microsatellites are sensitive to sudden population growth. The power of the FS test and accuracy of demographic parameter estimates, such as the time of expansion, were reduced proportionally to the level of homoplasy within the data. The analysis of Canary Island pine chloroplast microsatellite data indicated population expansions for almost all sample localities. Demographic expansions at the island level can be explained by the colonization of the archipelago by the pine, while population expansions of different ages in different localities within an island could be the result of local extinctions and recolonization dynamics. Comparable mitochondrial DNA sequence data from a parasite of P. canariensis, the weevil Brachyderes rugatus, supports this scenario, suggesting a key role for volcanism in the evolution of pine forest communities in the Canary Islands. © 2006 The Authors. |
format |
journal article |
topic_facet |
Canary Islands Chloroplast microsatellite Mismatch distribution Pinus canariensis Population expansion |
author |
Navascués, M. Vaxevanidou, Z. González-Martínez, S. C. Climent Maldonado, José María Gil, L. Emerson, B. C. |
author_facet |
Navascués, M. Vaxevanidou, Z. González-Martínez, S. C. Climent Maldonado, José María Gil, L. Emerson, B. C. |
author_sort |
Navascués, M. |
title |
Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine |
title_short |
Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine |
title_full |
Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine |
title_fullStr |
Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine |
title_full_unstemmed |
Chloroplast microsatellites reveal colonization and metapopulation dynamics in the Canary Island pine |
title_sort |
chloroplast microsatellites reveal colonization and metapopulation dynamics in the canary island pine |
publisher |
Wiley |
publishDate |
2006 |
url |
http://hdl.handle.net/20.500.12792/5333 http://hdl.handle.net/10261/294051 |
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