Genome-wide identification of genes involved in growth and fermentation activity at low temperature in Saccharomyces cerevisiae

Fermentation at low temperatures is one of the most popular current winemaking practices because of its reported positive impact on the aromatic profile of wines. However, low temperature is an additional hurdle to develop Saccharomyces cerevisiae wine yeasts, which are already stressed by high osmotic pressure, low pH and poor availability of nitrogen sources in grape must. Understanding the mechanisms of adaptation of S. cerevisiae to fermentation at low temperature would help to design strategies for process management, and to select and improve wine yeast strains specifically adapted to this winemaking practice. The problem has been addressed by several approaches in recent years, including transcriptomic and other high-throughput strategies. In this work we used a genome-wide screening of S. cerevisiae diploid mutant strain collections to identify genes that potentially contribute to adaptation to low temperature fermentation conditions. Candidate genes, impaired for growth at low temperatures (12 °C and 18 °C), but not at a permissive temperature (28 °C), were deleted in an industrial homozygous genetic background, wine yeast strain FX10, in both heterozygosis and homozygosis. Some candidate genes were required for growth at low temperatures only in the laboratory yeast genetic background, but not in FX10 (namely the genes involved in aromatic amino acid biosynthesis). Other genes related to ribosome biosynthesis (SNU66 and PAP2) were required for low-temperature fermentation of synthetic must (SM) in the industrial genetic background. This result coincides with our previous findings about translation efficiency with the fitness of different wine yeast strains at low temperature.

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Main Authors: Salvadó, Zoel, Ramos Alonso, Lucía, Tronchoni, Jordi, Penacho, Vanessa, García Ríos, Estéfani, Morales, Pilar, González García, Ramón, Guillamón, José Manuel
Other Authors: Ministerio de Economía y Competitividad (España)
Format: artículo biblioteca
Language:English
Published: Elsevier 2016-07-11
Subjects:S. cerevisiae, Genome-wide screening, Psychrotolerance, Industrial yeasts, Ribosome biosynthesis,
Online Access:http://hdl.handle.net/10261/139274
http://dx.doi.org/10.13039/501100003329
http://dx.doi.org/10.13039/501100000780
http://dx.doi.org/10.13039/100007652
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spelling dig-icvv-es-10261-1392742020-05-26T08:23:55Z Genome-wide identification of genes involved in growth and fermentation activity at low temperature in Saccharomyces cerevisiae Salvadó, Zoel Ramos Alonso, Lucía Tronchoni, Jordi Penacho, Vanessa García Ríos, Estéfani Morales, Pilar González García, Ramón Guillamón, José Manuel Ministerio de Economía y Competitividad (España) European Commission CSIC - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA) S. cerevisiae Genome-wide screening Psychrotolerance Industrial yeasts Ribosome biosynthesis Fermentation at low temperatures is one of the most popular current winemaking practices because of its reported positive impact on the aromatic profile of wines. However, low temperature is an additional hurdle to develop Saccharomyces cerevisiae wine yeasts, which are already stressed by high osmotic pressure, low pH and poor availability of nitrogen sources in grape must. Understanding the mechanisms of adaptation of S. cerevisiae to fermentation at low temperature would help to design strategies for process management, and to select and improve wine yeast strains specifically adapted to this winemaking practice. The problem has been addressed by several approaches in recent years, including transcriptomic and other high-throughput strategies. In this work we used a genome-wide screening of S. cerevisiae diploid mutant strain collections to identify genes that potentially contribute to adaptation to low temperature fermentation conditions. Candidate genes, impaired for growth at low temperatures (12 °C and 18 °C), but not at a permissive temperature (28 °C), were deleted in an industrial homozygous genetic background, wine yeast strain FX10, in both heterozygosis and homozygosis. Some candidate genes were required for growth at low temperatures only in the laboratory yeast genetic background, but not in FX10 (namely the genes involved in aromatic amino acid biosynthesis). Other genes related to ribosome biosynthesis (SNU66 and PAP2) were required for low-temperature fermentation of synthetic must (SM) in the industrial genetic background. This result coincides with our previous findings about translation efficiency with the fitness of different wine yeast strains at low temperature. Funding from the Spanish Government trough MINECO and FEDER funds: MINECO AGL2012-32064 and AGL2015-63629-R grants, INIA RM2012-00007-00-00 grant, MINECO RTC-2014-2186-2 and MINECO PCIN-2015-143 grants is acknowledged. Peer reviewed 2016-10-25T06:14:25Z 2016-10-25T06:14:25Z 2016-07-11 artículo http://purl.org/coar/resource_type/c_6501 International Journal of Food Microbiology 236: 38-46 (2016) 0168-1605 http://hdl.handle.net/10261/139274 10.1016/j.ijfoodmicro.2016.07.010 http://dx.doi.org/10.13039/501100003329 http://dx.doi.org/10.13039/501100000780 http://dx.doi.org/10.13039/100007652 en #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/AGL2015-63629-R info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/RTC-2014-2186-2 info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/PCIN-2015-143 Postprint http://dx.doi.org/10.1016/j.ijfoodmicro.2016.07.010 Sí open Elsevier
institution ICVV ES
collection DSpace
country España
countrycode ES
component Bibliográfico
access En linea
databasecode dig-icvv-es
tag biblioteca
region Europa del Sur
libraryname Biblioteca del ICVV España
language English
topic S. cerevisiae
Genome-wide screening
Psychrotolerance
Industrial yeasts
Ribosome biosynthesis
S. cerevisiae
Genome-wide screening
Psychrotolerance
Industrial yeasts
Ribosome biosynthesis
spellingShingle S. cerevisiae
Genome-wide screening
Psychrotolerance
Industrial yeasts
Ribosome biosynthesis
S. cerevisiae
Genome-wide screening
Psychrotolerance
Industrial yeasts
Ribosome biosynthesis
Salvadó, Zoel
Ramos Alonso, Lucía
Tronchoni, Jordi
Penacho, Vanessa
García Ríos, Estéfani
Morales, Pilar
González García, Ramón
Guillamón, José Manuel
Genome-wide identification of genes involved in growth and fermentation activity at low temperature in Saccharomyces cerevisiae
description Fermentation at low temperatures is one of the most popular current winemaking practices because of its reported positive impact on the aromatic profile of wines. However, low temperature is an additional hurdle to develop Saccharomyces cerevisiae wine yeasts, which are already stressed by high osmotic pressure, low pH and poor availability of nitrogen sources in grape must. Understanding the mechanisms of adaptation of S. cerevisiae to fermentation at low temperature would help to design strategies for process management, and to select and improve wine yeast strains specifically adapted to this winemaking practice. The problem has been addressed by several approaches in recent years, including transcriptomic and other high-throughput strategies. In this work we used a genome-wide screening of S. cerevisiae diploid mutant strain collections to identify genes that potentially contribute to adaptation to low temperature fermentation conditions. Candidate genes, impaired for growth at low temperatures (12 °C and 18 °C), but not at a permissive temperature (28 °C), were deleted in an industrial homozygous genetic background, wine yeast strain FX10, in both heterozygosis and homozygosis. Some candidate genes were required for growth at low temperatures only in the laboratory yeast genetic background, but not in FX10 (namely the genes involved in aromatic amino acid biosynthesis). Other genes related to ribosome biosynthesis (SNU66 and PAP2) were required for low-temperature fermentation of synthetic must (SM) in the industrial genetic background. This result coincides with our previous findings about translation efficiency with the fitness of different wine yeast strains at low temperature.
author2 Ministerio de Economía y Competitividad (España)
author_facet Ministerio de Economía y Competitividad (España)
Salvadó, Zoel
Ramos Alonso, Lucía
Tronchoni, Jordi
Penacho, Vanessa
García Ríos, Estéfani
Morales, Pilar
González García, Ramón
Guillamón, José Manuel
format artículo
topic_facet S. cerevisiae
Genome-wide screening
Psychrotolerance
Industrial yeasts
Ribosome biosynthesis
author Salvadó, Zoel
Ramos Alonso, Lucía
Tronchoni, Jordi
Penacho, Vanessa
García Ríos, Estéfani
Morales, Pilar
González García, Ramón
Guillamón, José Manuel
author_sort Salvadó, Zoel
title Genome-wide identification of genes involved in growth and fermentation activity at low temperature in Saccharomyces cerevisiae
title_short Genome-wide identification of genes involved in growth and fermentation activity at low temperature in Saccharomyces cerevisiae
title_full Genome-wide identification of genes involved in growth and fermentation activity at low temperature in Saccharomyces cerevisiae
title_fullStr Genome-wide identification of genes involved in growth and fermentation activity at low temperature in Saccharomyces cerevisiae
title_full_unstemmed Genome-wide identification of genes involved in growth and fermentation activity at low temperature in Saccharomyces cerevisiae
title_sort genome-wide identification of genes involved in growth and fermentation activity at low temperature in saccharomyces cerevisiae
publisher Elsevier
publishDate 2016-07-11
url http://hdl.handle.net/10261/139274
http://dx.doi.org/10.13039/501100003329
http://dx.doi.org/10.13039/501100000780
http://dx.doi.org/10.13039/100007652
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