Genome-wide analysis of MIKCC-type MADS box genes in grapevine

Genome-wide analysis of MIKCC-type MADS box genes in grapevine

16 pages, 5 figures.-- PMID: 18997115 [PubMed].-- PMCID: PMC2613716.-- First published online Nov 7, 2008.

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Main Authors: Díaz-Riquelme, José, Lijavetzky, Diego, Martínez-Zapater, José M., Carmona, María José
Other Authors: Ministerio de Educación y Ciencia (España)
Format: artículo biblioteca
Language:English
Published: American Society of Plant Biologists 2009-01
Online Access:http://hdl.handle.net/10261/11244
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spelling dig-icvv-es-10261-112442021-12-28T15:42:39Z Genome-wide analysis of MIKCC-type MADS box genes in grapevine Díaz-Riquelme, José Lijavetzky, Diego Martínez-Zapater, José M. Carmona, María José Ministerio de Educación y Ciencia (España) 16 pages, 5 figures.-- PMID: 18997115 [PubMed].-- PMCID: PMC2613716.-- First published online Nov 7, 2008. Supporting information (Suppl. fig. S1-S4, tables S1-S2) available at: http://www.plantphysiol.org/cgi/content/full/pp.108.131052/DC1 Full-text article available Open Access at the publisher's site. MIKC(C)-type MADS box genes encode transcription factors that play crucial roles in plant growth and development. Analysis of the grapevine (Vitis vinifera) genome revealed up to 38 MIKC(C)-type genes. We report here a complete analysis of this gene family regarding their phylogenetic relationships with homologous genes identified in other sequenced dicot genomes, their genome location, and gene structure and expression. The grapevine genes cluster in 13 subfamilies with their Arabidopsis (Arabidopsis thaliana) and poplar (Populus trichocarpa) counterparts. The lack of recent whole genome duplications in grapevine allows assigning the gene diversification processes observed within each subfamily either to an ancestral polyploidization event predating the divergence of those three species or to later duplication events within each lineage. Expression profiles of MIKC(C)-type genes in vegetative and reproductive organs as well as during flower and tendril development show conserved expression domains for specific subfamilies but also reflect characteristic features of grapevine development. Expression analyses in latent buds and during flower development reveal common features previously described in other plant systems as well as possible new roles for members of some subfamilies during flowering transition. The analysis of MIKC(C)-type genes in grapevine helps in understanding the origin of gene diversification within each subfamily and provides the basis for functional analyses to uncover the role of these MADS box genes in grapevine development. This work was supported by the Ministerio de Educación y Ciencia (grant no. BIO2005–7612 and a predoctoral fellowship to J.D.-R.). Peer reviewed 2009-03-05T08:08:27Z 2009-03-05T08:08:27Z 2009-01 artículo http://purl.org/coar/resource_type/c_6501 Plant Physiology 149: 354-369 (2009) 0032-0889 http://hdl.handle.net/10261/11244 10.1104/pp.108.131052 18997115 en http://dx.doi.org/10.1104/pp.108.131052 open 918459 bytes application/pdf American Society of Plant Biologists
institution ICVV ES
collection DSpace
country España
countrycode ES
component Bibliográfico
access En linea
databasecode dig-icvv-es
tag biblioteca
region Europa del Sur
libraryname Biblioteca del ICVV España
language English
description 16 pages, 5 figures.-- PMID: 18997115 [PubMed].-- PMCID: PMC2613716.-- First published online Nov 7, 2008.
author2 Ministerio de Educación y Ciencia (España)
author_facet Ministerio de Educación y Ciencia (España)
Díaz-Riquelme, José
Lijavetzky, Diego
Martínez-Zapater, José M.
Carmona, María José
format artículo
author Díaz-Riquelme, José
Lijavetzky, Diego
Martínez-Zapater, José M.
Carmona, María José
spellingShingle Díaz-Riquelme, José
Lijavetzky, Diego
Martínez-Zapater, José M.
Carmona, María José
Genome-wide analysis of MIKCC-type MADS box genes in grapevine
author_sort Díaz-Riquelme, José
title Genome-wide analysis of MIKCC-type MADS box genes in grapevine
title_short Genome-wide analysis of MIKCC-type MADS box genes in grapevine
title_full Genome-wide analysis of MIKCC-type MADS box genes in grapevine
title_fullStr Genome-wide analysis of MIKCC-type MADS box genes in grapevine
title_full_unstemmed Genome-wide analysis of MIKCC-type MADS box genes in grapevine
title_sort genome-wide analysis of mikcc-type mads box genes in grapevine
publisher American Society of Plant Biologists
publishDate 2009-01
url http://hdl.handle.net/10261/11244
work_keys_str_mv AT diazriquelmejose genomewideanalysisofmikcctypemadsboxgenesingrapevine
AT lijavetzkydiego genomewideanalysisofmikcctypemadsboxgenesingrapevine
AT martinezzapaterjosem genomewideanalysisofmikcctypemadsboxgenesingrapevine
AT carmonamariajose genomewideanalysisofmikcctypemadsboxgenesingrapevine
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