Airborne DNA reveals predictable spatial and seasonal dynamics of fungi
8 pages, 4 figures, supplementary information https://doi.org/10.1038/s41586-024-07658-9.-- Data availability: All data used in this paper are available at Zenodo (https://doi.org/10.5281/zenodo.10444737)59. GSSP data were downloaded from Ovaskainen et al.3. Climatic data were downloaded from the Copernicus Climate Change Service Climate Data Store42 (‘ERA5 hourly data on single levels dataset’ and ‘sis biodiversity era5 global dataset’). We extracted spore size and trophic guild data from data assembled by Aguilar-Trigueros et al.54. Spore size data originate from species-level taxonomic descriptions in Mycobank.-- Code availability: The R pipeline that can be used to reproduce the results of this paper is available at Zenodo (https://doi.org/10.5281/zenodo.10444737)59. All analyses were conducted in R v.4.3.1 (ref. 82) with the packages ade4 1.7-22, adespatial 0.3-23, ape 5.7-1, ecmwfr 1.5.0, geosphere 1.5-18, Hmsc 3.0-14, jsonify 1.2.2, kgc 1.0.0.2, lme4 1.1-35.1, lubridate 1.9.3, maps 3.4.2, MASS 7.3-60, ncdf4 1.22, nlme 3.1-162, phyloseq 1.46.0, phytools 2.1-1, raster 3.6-26, rgdal 1.6-7, scales 1.3.0, sjstats 0.18.2, tidyverse 2.0.0, vegan 2.6.4, VennDiagram 1.7.3, vioplot 0.4.0 and wordcloud 2.6
Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Nature Publishing Group
2024-07
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Subjects: | Conserve and sustainably use the oceans, seas and marine resources for sustainable development, |
Online Access: | http://hdl.handle.net/10261/366562 |
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Conserve and sustainably use the oceans, seas and marine resources for sustainable development Conserve and sustainably use the oceans, seas and marine resources for sustainable development |
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Conserve and sustainably use the oceans, seas and marine resources for sustainable development Conserve and sustainably use the oceans, seas and marine resources for sustainable development Abrego, Nerea Furneaux, Brendan Hardwick, Bess Somervuo, Panu Palorinne, Isabella Aguilar-Trigueros, Carlos A. Andrew, Nigel R. Babiy, Ulyana V. Bao, Tao Bazzano, Gisela Bondarchuk, Svetlana Bonebrake, Timothy C. Brennan, Georgina Bret-Harte, Syndonia Bässler, Claus Cagnolo, Luciano Cameron, Erin K. Chapurlat, Elodie Creer, Simon D’Acqui, Luigi P. Vere, Natasha de Desprez-Loustau, Marie-Laure Dongmo, Michel A. K. Dyrholm Jacobsen, Ida B. Fisher, Brian L. Flores de Jeús, Miguel Gilbert, Gregory S. Griffith, Gareth W. Gritsuk, Anna A. Gross, Andrin Grudd, Håkan Halme, Halme Hanna, Rachid Hansen, Jannik Hansen, Lars Holst Hegbe, Apollon D. M. T. Hill, Sarah Hogg, Ian D. Hultman, Jenni Hyde, Kevin D. Hynson, Nicole A. Ivanova, Natalia Karisto, Petteri Kerdraon-Byrne, Deirdre Knorre, Anastasia Krisai-Greilhuber, Irmgard Kurhinen, Juri Kuzmina, Masha Lecomte, Nicolas Lecomte, Erin Loaiza, Viviana Lundin, Erik Meire, Alexander Mešić, Armin Miettinen, Otto Monkhouse, Norman Mortimer, Peter E. Müller, Jörg Nilsson, R. Henrik Nonti, Puani Yannick C. Nordén, Jenni Nordén, Björn Norros, Veera Paz, Claudia Pellikka, Petri Pereira, Danilo Petch, Geoff Pitkänen, Juha-Matti Popa, Flavius Potter, Caitlin Purhonen, Jenna Pätsi, Sanna Rafiq, Abdullah Raharinjanahary, Dimby Rakos, Niklas Rathnayaka, Achala R. Raundrup, Katrin Rebriev, Yury A. Rikkinen, Jouko Rogers, Hanna M. K. Rogovsky, Andrey Rozhkov, Yuri Runnel, Kadri Saarto, Annika Savchenko, Anton Schlegel, Markus Martin-Schmidt, Niels Seibold, Sebastian Skjøth, Carsten Stengel, Elisa Sutyrina, Svetlana V Syvänperä, Ilkka Tedersoo, Leho Timm, Jebidiah Tipton, Laura Toju, Hirokazu Uscka-Perzanowska, Maria Bank, Michelle van der Bank, F. Herman van der Vandenbrink, Bryan Ventura, Stefano Vignisson, Solvi R. Wang, Xiaoyang Weisser, Wolfgang Wijesinghe, Subodini N. Wright, S. Joseph Yang, Chunyan Yorou, Nourou Young, Amanda Yu, Douglas W. Zakharov, Evgeny V. Hebert, Paul D. N. Roslin, Tomas Ovaskainen, Otso Airborne DNA reveals predictable spatial and seasonal dynamics of fungi |
description |
8 pages, 4 figures, supplementary information https://doi.org/10.1038/s41586-024-07658-9.-- Data availability: All data used in this paper are available at Zenodo (https://doi.org/10.5281/zenodo.10444737)59. GSSP data were downloaded from Ovaskainen et al.3. Climatic data were downloaded from the Copernicus Climate Change Service Climate Data Store42 (‘ERA5 hourly data on single levels dataset’ and ‘sis biodiversity era5 global dataset’). We extracted spore size and trophic guild data from data assembled by Aguilar-Trigueros et al.54. Spore size data originate from species-level taxonomic descriptions in Mycobank.-- Code availability: The R pipeline that can be used to reproduce the results of this paper is available at Zenodo (https://doi.org/10.5281/zenodo.10444737)59. All analyses were conducted in R v.4.3.1 (ref. 82) with the packages ade4 1.7-22, adespatial 0.3-23, ape 5.7-1, ecmwfr 1.5.0, geosphere 1.5-18, Hmsc 3.0-14, jsonify 1.2.2, kgc 1.0.0.2, lme4 1.1-35.1, lubridate 1.9.3, maps 3.4.2, MASS 7.3-60, ncdf4 1.22, nlme 3.1-162, phyloseq 1.46.0, phytools 2.1-1, raster 3.6-26, rgdal 1.6-7, scales 1.3.0, sjstats 0.18.2, tidyverse 2.0.0, vegan 2.6.4, VennDiagram 1.7.3, vioplot 0.4.0 and wordcloud 2.6 |
author2 |
Agencia Estatal de Investigación (España) |
author_facet |
Agencia Estatal de Investigación (España) Abrego, Nerea Furneaux, Brendan Hardwick, Bess Somervuo, Panu Palorinne, Isabella Aguilar-Trigueros, Carlos A. Andrew, Nigel R. Babiy, Ulyana V. Bao, Tao Bazzano, Gisela Bondarchuk, Svetlana Bonebrake, Timothy C. Brennan, Georgina Bret-Harte, Syndonia Bässler, Claus Cagnolo, Luciano Cameron, Erin K. Chapurlat, Elodie Creer, Simon D’Acqui, Luigi P. Vere, Natasha de Desprez-Loustau, Marie-Laure Dongmo, Michel A. K. Dyrholm Jacobsen, Ida B. Fisher, Brian L. Flores de Jeús, Miguel Gilbert, Gregory S. Griffith, Gareth W. Gritsuk, Anna A. Gross, Andrin Grudd, Håkan Halme, Halme Hanna, Rachid Hansen, Jannik Hansen, Lars Holst Hegbe, Apollon D. M. T. Hill, Sarah Hogg, Ian D. Hultman, Jenni Hyde, Kevin D. Hynson, Nicole A. Ivanova, Natalia Karisto, Petteri Kerdraon-Byrne, Deirdre Knorre, Anastasia Krisai-Greilhuber, Irmgard Kurhinen, Juri Kuzmina, Masha Lecomte, Nicolas Lecomte, Erin Loaiza, Viviana Lundin, Erik Meire, Alexander Mešić, Armin Miettinen, Otto Monkhouse, Norman Mortimer, Peter E. Müller, Jörg Nilsson, R. Henrik Nonti, Puani Yannick C. Nordén, Jenni Nordén, Björn Norros, Veera Paz, Claudia Pellikka, Petri Pereira, Danilo Petch, Geoff Pitkänen, Juha-Matti Popa, Flavius Potter, Caitlin Purhonen, Jenna Pätsi, Sanna Rafiq, Abdullah Raharinjanahary, Dimby Rakos, Niklas Rathnayaka, Achala R. Raundrup, Katrin Rebriev, Yury A. Rikkinen, Jouko Rogers, Hanna M. K. Rogovsky, Andrey Rozhkov, Yuri Runnel, Kadri Saarto, Annika Savchenko, Anton Schlegel, Markus Martin-Schmidt, Niels Seibold, Sebastian Skjøth, Carsten Stengel, Elisa Sutyrina, Svetlana V Syvänperä, Ilkka Tedersoo, Leho Timm, Jebidiah Tipton, Laura Toju, Hirokazu Uscka-Perzanowska, Maria Bank, Michelle van der Bank, F. Herman van der Vandenbrink, Bryan Ventura, Stefano Vignisson, Solvi R. Wang, Xiaoyang Weisser, Wolfgang Wijesinghe, Subodini N. Wright, S. Joseph Yang, Chunyan Yorou, Nourou Young, Amanda Yu, Douglas W. Zakharov, Evgeny V. Hebert, Paul D. N. Roslin, Tomas Ovaskainen, Otso |
format |
artículo |
topic_facet |
Conserve and sustainably use the oceans, seas and marine resources for sustainable development |
author |
Abrego, Nerea Furneaux, Brendan Hardwick, Bess Somervuo, Panu Palorinne, Isabella Aguilar-Trigueros, Carlos A. Andrew, Nigel R. Babiy, Ulyana V. Bao, Tao Bazzano, Gisela Bondarchuk, Svetlana Bonebrake, Timothy C. Brennan, Georgina Bret-Harte, Syndonia Bässler, Claus Cagnolo, Luciano Cameron, Erin K. Chapurlat, Elodie Creer, Simon D’Acqui, Luigi P. Vere, Natasha de Desprez-Loustau, Marie-Laure Dongmo, Michel A. K. Dyrholm Jacobsen, Ida B. Fisher, Brian L. Flores de Jeús, Miguel Gilbert, Gregory S. Griffith, Gareth W. Gritsuk, Anna A. Gross, Andrin Grudd, Håkan Halme, Halme Hanna, Rachid Hansen, Jannik Hansen, Lars Holst Hegbe, Apollon D. M. T. Hill, Sarah Hogg, Ian D. Hultman, Jenni Hyde, Kevin D. Hynson, Nicole A. Ivanova, Natalia Karisto, Petteri Kerdraon-Byrne, Deirdre Knorre, Anastasia Krisai-Greilhuber, Irmgard Kurhinen, Juri Kuzmina, Masha Lecomte, Nicolas Lecomte, Erin Loaiza, Viviana Lundin, Erik Meire, Alexander Mešić, Armin Miettinen, Otto Monkhouse, Norman Mortimer, Peter E. Müller, Jörg Nilsson, R. Henrik Nonti, Puani Yannick C. Nordén, Jenni Nordén, Björn Norros, Veera Paz, Claudia Pellikka, Petri Pereira, Danilo Petch, Geoff Pitkänen, Juha-Matti Popa, Flavius Potter, Caitlin Purhonen, Jenna Pätsi, Sanna Rafiq, Abdullah Raharinjanahary, Dimby Rakos, Niklas Rathnayaka, Achala R. Raundrup, Katrin Rebriev, Yury A. Rikkinen, Jouko Rogers, Hanna M. K. Rogovsky, Andrey Rozhkov, Yuri Runnel, Kadri Saarto, Annika Savchenko, Anton Schlegel, Markus Martin-Schmidt, Niels Seibold, Sebastian Skjøth, Carsten Stengel, Elisa Sutyrina, Svetlana V Syvänperä, Ilkka Tedersoo, Leho Timm, Jebidiah Tipton, Laura Toju, Hirokazu Uscka-Perzanowska, Maria Bank, Michelle van der Bank, F. Herman van der Vandenbrink, Bryan Ventura, Stefano Vignisson, Solvi R. Wang, Xiaoyang Weisser, Wolfgang Wijesinghe, Subodini N. Wright, S. Joseph Yang, Chunyan Yorou, Nourou Young, Amanda Yu, Douglas W. Zakharov, Evgeny V. Hebert, Paul D. N. Roslin, Tomas Ovaskainen, Otso |
author_sort |
Abrego, Nerea |
title |
Airborne DNA reveals predictable spatial and seasonal dynamics of fungi |
title_short |
Airborne DNA reveals predictable spatial and seasonal dynamics of fungi |
title_full |
Airborne DNA reveals predictable spatial and seasonal dynamics of fungi |
title_fullStr |
Airborne DNA reveals predictable spatial and seasonal dynamics of fungi |
title_full_unstemmed |
Airborne DNA reveals predictable spatial and seasonal dynamics of fungi |
title_sort |
airborne dna reveals predictable spatial and seasonal dynamics of fungi |
publisher |
Nature Publishing Group |
publishDate |
2024-07 |
url |
http://hdl.handle.net/10261/366562 |
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dig-icm-es-10261-3665622024-08-28T10:48:48Z Airborne DNA reveals predictable spatial and seasonal dynamics of fungi Abrego, Nerea Furneaux, Brendan Hardwick, Bess Somervuo, Panu Palorinne, Isabella Aguilar-Trigueros, Carlos A. Andrew, Nigel R. Babiy, Ulyana V. Bao, Tao Bazzano, Gisela Bondarchuk, Svetlana Bonebrake, Timothy C. Brennan, Georgina Bret-Harte, Syndonia Bässler, Claus Cagnolo, Luciano Cameron, Erin K. Chapurlat, Elodie Creer, Simon D’Acqui, Luigi P. Vere, Natasha de Desprez-Loustau, Marie-Laure Dongmo, Michel A. K. Dyrholm Jacobsen, Ida B. Fisher, Brian L. Flores de Jeús, Miguel Gilbert, Gregory S. Griffith, Gareth W. Gritsuk, Anna A. Gross, Andrin Grudd, Håkan Halme, Halme Hanna, Rachid Hansen, Jannik Hansen, Lars Holst Hegbe, Apollon D. M. T. Hill, Sarah Hogg, Ian D. Hultman, Jenni Hyde, Kevin D. Hynson, Nicole A. Ivanova, Natalia Karisto, Petteri Kerdraon-Byrne, Deirdre Knorre, Anastasia Krisai-Greilhuber, Irmgard Kurhinen, Juri Kuzmina, Masha Lecomte, Nicolas Lecomte, Erin Loaiza, Viviana Lundin, Erik Meire, Alexander Mešić, Armin Miettinen, Otto Monkhouse, Norman Mortimer, Peter E. Müller, Jörg Nilsson, R. Henrik Nonti, Puani Yannick C. Nordén, Jenni Nordén, Björn Norros, Veera Paz, Claudia Pellikka, Petri Pereira, Danilo Petch, Geoff Pitkänen, Juha-Matti Popa, Flavius Potter, Caitlin Purhonen, Jenna Pätsi, Sanna Rafiq, Abdullah Raharinjanahary, Dimby Rakos, Niklas Rathnayaka, Achala R. Raundrup, Katrin Rebriev, Yury A. Rikkinen, Jouko Rogers, Hanna M. K. Rogovsky, Andrey Rozhkov, Yuri Runnel, Kadri Saarto, Annika Savchenko, Anton Schlegel, Markus Martin-Schmidt, Niels Seibold, Sebastian Skjøth, Carsten Stengel, Elisa Sutyrina, Svetlana V Syvänperä, Ilkka Tedersoo, Leho Timm, Jebidiah Tipton, Laura Toju, Hirokazu Uscka-Perzanowska, Maria Bank, Michelle van der Bank, F. Herman van der Vandenbrink, Bryan Ventura, Stefano Vignisson, Solvi R. Wang, Xiaoyang Weisser, Wolfgang Wijesinghe, Subodini N. Wright, S. Joseph Yang, Chunyan Yorou, Nourou Young, Amanda Yu, Douglas W. Zakharov, Evgeny V. Hebert, Paul D. N. Roslin, Tomas Ovaskainen, Otso Agencia Estatal de Investigación (España) Academy of Finland European Commission Jane and Aatos Erkko Foundation Research Council of Norway Estonian Research Council Canada Foundation for Innovation Natural Sciences and Engineering Research Council of Canada Federal Ministry of Science, Research and Economy (Austria) Croatian Science Foundation National Research Council of Thailand Institute of Polar Science Natural Environment Research Council (UK) National Science Foundation (US) National Science Foundation of China Research Grants Council (Hong Kong) Norwegian Institute for Nature Research New Frontiers in Research Fund Swedish Research Council for Environment, Agricultural Sciences and Spatial Planning Mushroom Research Foundation (Thailand) National Biodiversity Future Center Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72] Conserve and sustainably use the oceans, seas and marine resources for sustainable development 8 pages, 4 figures, supplementary information https://doi.org/10.1038/s41586-024-07658-9.-- Data availability: All data used in this paper are available at Zenodo (https://doi.org/10.5281/zenodo.10444737)59. GSSP data were downloaded from Ovaskainen et al.3. Climatic data were downloaded from the Copernicus Climate Change Service Climate Data Store42 (‘ERA5 hourly data on single levels dataset’ and ‘sis biodiversity era5 global dataset’). We extracted spore size and trophic guild data from data assembled by Aguilar-Trigueros et al.54. Spore size data originate from species-level taxonomic descriptions in Mycobank.-- Code availability: The R pipeline that can be used to reproduce the results of this paper is available at Zenodo (https://doi.org/10.5281/zenodo.10444737)59. All analyses were conducted in R v.4.3.1 (ref. 82) with the packages ade4 1.7-22, adespatial 0.3-23, ape 5.7-1, ecmwfr 1.5.0, geosphere 1.5-18, Hmsc 3.0-14, jsonify 1.2.2, kgc 1.0.0.2, lme4 1.1-35.1, lubridate 1.9.3, maps 3.4.2, MASS 7.3-60, ncdf4 1.22, nlme 3.1-162, phyloseq 1.46.0, phytools 2.1-1, raster 3.6-26, rgdal 1.6-7, scales 1.3.0, sjstats 0.18.2, tidyverse 2.0.0, vegan 2.6.4, VennDiagram 1.7.3, vioplot 0.4.0 and wordcloud 2.6 Fungi are among the most diverse and ecologically important kingdoms in life. However, the distributional ranges of fungi remain largely unknown as do the ecological mechanisms that shape their distributions1,2. To provide an integrated view of the spatial and seasonal dynamics of fungi, we implemented a globally distributed standardized aerial sampling of fungal spores3. The vast majority of operational taxonomic units were detected within only one climatic zone, and the spatiotemporal patterns of species richness and community composition were mostly explained by annual mean air temperature. Tropical regions hosted the highest fungal diversity except for lichenized, ericoid mycorrhizal and ectomycorrhizal fungi, which reached their peak diversity in temperate regions. The sensitivity in climatic responses was associated with phylogenetic relatedness, suggesting that large-scale distributions of some fungal groups are partially constrained by their ancestral niche. There was a strong phylogenetic signal in seasonal sensitivity, suggesting that some groups of fungi have retained their ancestral trait of sporulating for only a short period. Overall, our results show that the hyperdiverse kingdom of fungi follows globally highly predictable spatial and temporal dynamics, with seasonality in both species richness and community composition increasing with latitude. Our study reports patterns resembling those described for other major groups of organisms, thus making a major contribution to the long-standing debate on whether organisms with a microbial lifestyle follow the global biodiversity paradigms known for macroorganisms This study was supported by funding from the Academy of Finland (grant nos. 336212, 345110, 322266, 335354 and 357475); the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement no. 856506; ERC-synergy project LIFEPLAN); the EU Horizon 2020 project INTERACT under grant agreement nos. 730938 and 871120; the Jane and Aatos Erkko Foundation; the Research Council of Norway through its Centres of Excellence Funding Scheme (no. 223257); the Estonian Research Council (grant no. PRG1170); FORMAS (grant nos. 215-2011-498 and 226-2014-1109); the Canada Foundation for Innovation, Polar Knowledge Canada, Natural Sciences and Engineering Research Council of Canada (NSERC Discover); Natural Environment Research Council (NERC) UK (grant nos. NE/N001710/1 and NE/N002431/1); BBSRC (grant no. BB/L012286/1); the Austrian Ministry of Science (the ABOL-HRSM project); the municipality of Vienna (Division of Environmental Protection); Southern Scientific Centre RAS (project no. 122020100332-8); the Croatian Science Foundation under the project FunMed (grant no. HRZZ-IP-2022-10-5219); the National Research Council of Thailand (grant no. N42A650547); Dirigibile Italia Station, Institute of Polar Science (ISP) – National Research Council; the US National Science Foundation (nos. DEB-1655896, DEB-1655076 and DEB-1932467); the Pepper-Giberson Chair Fund; the National Science Foundation of China (grant nos. 41761144055 and 41771063); São Paulo Research Foundation (no. FAPESP 2016/25197-0) and Legado das Águas-Brazil; Hong Kong’s Research Grants Council (General Research Fund no. 17118317); the Norwegian Institute for Nature Research; Canada’s New Frontiers in Research Fund; Swedish Research Council support (grant no. 4.3-2021-00164) to SITES and Abisko Scientific Research Station; the Mushroom Research Foundation, Thailand; and the Italian National Biodiversity Future Center (MUR-PNRR, Mission 4.2. Investment 1.4, Project no. CN00000033) With the institutional support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S) Peer reviewed 2024-08-28T10:48:48Z 2024-08-28T10:48:48Z 2024-07 artículo http://purl.org/coar/resource_type/c_6501 Nature 631: 835–842 (2024) 0028-0836 CEX2019-000928-S http://hdl.handle.net/10261/366562 10.1038/s41586-024-07658-9 1476-4687 en #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/EC/H2020/856506 info:eu-repo/grantAgreement/EC/H2020/730938 info:eu-repo/grantAgreement/EC/H2020/871120 Publisher's version https://doi.org/10.1038/s41586-024-07658-9 Sí open Nature Publishing Group |