Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa

Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa

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pages, 7 figures, 1 table.-- Data Availability Statement: Sequence data have been deposited in ENA under accession number PRJEB60085. The R-scripts used to calculate growth rates, generate figures and statistical analyses are available at: https://github.com/onadeulofeu/Single-ASV-based_prokaryotes_growth_rates.

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Main Authors: Deulofeu, Ona, Sebastián, Marta, Auladell Martin, Adria, Ferrera, Isabel, Sánchez, Olga, Gasol, Josep M.
Other Authors: Ministerio de Economía y Competitividad (España)
Format: artículo biblioteca
Language:English
Published: Oxford University Press 2024
Subjects:Conserve and sustainably use the oceans, seas and marine resources for sustainable development,
Online Access:http://hdl.handle.net/10261/355892
http://dx.doi.org/10.13039/501100003329
http://dx.doi.org/10.13039/501100011033
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spelling dig-icm-es-10261-3558922024-05-06T08:52:22Z Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa Deulofeu, Ona Sebastián, Marta Auladell Martin, Adria Ferrera, Isabel Sánchez, Olga Gasol, Josep M. Ministerio de Economía y Competitividad (España) Ministerio de Ciencia, Innovación y Universidades (España) Agencia Estatal de Investigación (España) Conserve and sustainably use the oceans, seas and marine resources for sustainable development pages, 7 figures, 1 table.-- Data Availability Statement: Sequence data have been deposited in ENA under accession number PRJEB60085. The R-scripts used to calculate growth rates, generate figures and statistical analyses are available at: https://github.com/onadeulofeu/Single-ASV-based_prokaryotes_growth_rates. Marine prokaryotes play crucial roles in ocean biogeochemical cycles, being their contribution strongly influenced by their growth rates. Hence, elucidating the variability and phylogenetic imprint of marine prokaryotes' growth rates are crucial for better determining the role of individual taxa in biogeochemical cycles. Here, we estimated prokaryotic growth rates at high phylogenetic resolution in manipulation experiments using water from the northwestern Mediterranean Sea. Experiments were run in the four seasons with different treatments that reduced growth limiting factors: predators, nutrient availability, viruses, and light. Single-amplicon sequence variants (ASVs)-based growth rates were calculated from changes in estimated absolute abundances using total prokaryotic abundance and the proportion of each individual ASV. The trends obtained for growth rates in the different experiments were consistent with other estimates based on total cell-counts, CARD-FISH subcommunity cell-counts or metagenomic-OTUs. Our calculations unveil a broad range of growth rates [0.3-10 d-1] with significant variability even within closely related ASVs. Likewise, the impact of growth limiting factors changed over the year for individual ASVs. High numbers of responsive ASVs were shared between winter and spring seasons, as well as throughout the year in the treatments with reduced nutrient limitation and viral pressure. The most responsive ASVs were rare in the in situ communities, comprising a large pool of taxa with the potential to rapidly respond to environmental changes. Essentially, our results highlight the lack of phylogenetic coherence in the range of growth rates observed, and differential responses to the various limiting factors, even for closely related taxa This research was supported by grants REMEI (CTM2015-70340-R) and MIAU (RTI2018-101025-B-100) funded by the Spanish Ministry of Science and Innovation. We acknowledge the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S). Adrià Auladell and Ona Deulofeu-Capo were supported by Spanish FPI grants Peer reviewed 2024-05-06T08:52:21Z 2024-05-06T08:52:21Z 2024 artículo http://purl.org/coar/resource_type/c_6501 ISME Communications: (2024) CEX2019-000928-S http://hdl.handle.net/10261/355892 10.1093/ismeco/ycae066 2730-6151 http://dx.doi.org/10.13039/501100003329 http://dx.doi.org/10.13039/501100011033 en #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/MINECO//CTM2015-70340-R/ES/REGULACION DEL (META)GENOMA PROCARIOTICO DE UN AMBIENTE COSTERO MARINO: FACTORES BIOLOGICOS Y OCEANOGRAFICOS QUE DETERMINAN LA PRESENCIA Y FUNCION BIOGEOQUIMICA DE PROCARIOTAS/ info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/RTI2018-101025-B-I00/ES/FORMACION Y CAMBIO EN LA ESTRUCTURA DE LAS COMUNIDADES MICROBIANAS MARINAS A ESCALAS TEMPORALES Y ESPACIALES CORTAS: EL PAPEL DE LAS ESPECIES DE CRECIMIENTO EXPLOSIVO/ Postprint https://doi.org/10.1093/ismeco/ycae066 Sí open Oxford University Press
institution ICM ES
collection DSpace
country España
countrycode ES
component Bibliográfico
access En linea
databasecode dig-icm-es
tag biblioteca
region Europa del Sur
libraryname Biblioteca del ICM España
language English
topic Conserve and sustainably use the oceans, seas and marine resources for sustainable development
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
spellingShingle Conserve and sustainably use the oceans, seas and marine resources for sustainable development
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
Deulofeu, Ona
Sebastián, Marta
Auladell Martin, Adria
Ferrera, Isabel
Sánchez, Olga
Gasol, Josep M.
Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa
description pages, 7 figures, 1 table.-- Data Availability Statement: Sequence data have been deposited in ENA under accession number PRJEB60085. The R-scripts used to calculate growth rates, generate figures and statistical analyses are available at: https://github.com/onadeulofeu/Single-ASV-based_prokaryotes_growth_rates.
author2 Ministerio de Economía y Competitividad (España)
author_facet Ministerio de Economía y Competitividad (España)
Deulofeu, Ona
Sebastián, Marta
Auladell Martin, Adria
Ferrera, Isabel
Sánchez, Olga
Gasol, Josep M.
format artículo
topic_facet Conserve and sustainably use the oceans, seas and marine resources for sustainable development
author Deulofeu, Ona
Sebastián, Marta
Auladell Martin, Adria
Ferrera, Isabel
Sánchez, Olga
Gasol, Josep M.
author_sort Deulofeu, Ona
title Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa
title_short Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa
title_full Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa
title_fullStr Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa
title_full_unstemmed Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa
title_sort growth rates of marine prokaryotes are extremely diverse, even among closely related taxa
publisher Oxford University Press
publishDate 2024
url http://hdl.handle.net/10261/355892
http://dx.doi.org/10.13039/501100003329
http://dx.doi.org/10.13039/501100011033
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AT ferreraisabel growthratesofmarineprokaryotesareextremelydiverseevenamongcloselyrelatedtaxa
AT sanchezolga growthratesofmarineprokaryotesareextremelydiverseevenamongcloselyrelatedtaxa
AT gasoljosepm growthratesofmarineprokaryotesareextremelydiverseevenamongcloselyrelatedtaxa
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