Functional redundancy of seasonal vitamin B12 biosynthesis pathways in coastal marine microbial communities

Functional redundancy of seasonal vitamin B12 biosynthesis pathways in coastal marine microbial communities

18 pages, 8 figures, supporting information https://doi.org/10.1111/1462-2920.16545.-- Data Availability Statement: The catalogue of prokaryotic genes associated with all the B12-related KEGGs used in this study is accessible online in the Zenodo repository: 10.5281/zenodo.7409517. The raw sequences were deposited in the NCBI Sequence Read Archive under accession number PRJEB66489: https://www.ncbi.nlm.nih.gov/sra/PRJEB66489 and PRJEB26919

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Bibliographic Details
Main Authors: Beauvais, Maxime, Schatt, Philippe, Montiel Fontanet, Lidia, Logares, Ramiro, Galand, Pierre E., Bouget, François-Yves
Other Authors: Sorbonne Université
Format: artículo biblioteca
Language:English
Published: Applied Microbiology International 2023-12
Subjects:Conserve and sustainably use the oceans, seas and marine resources for sustainable development,
Online Access:http://hdl.handle.net/10261/341440
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spelling dig-icm-es-10261-3414402023-12-29T10:14:55Z Functional redundancy of seasonal vitamin B12 biosynthesis pathways in coastal marine microbial communities Beauvais, Maxime Schatt, Philippe Montiel Fontanet, Lidia Logares, Ramiro Galand, Pierre E. Bouget, François-Yves Sorbonne Université Agencia Estatal de Investigación (España) Conserve and sustainably use the oceans, seas and marine resources for sustainable development 18 pages, 8 figures, supporting information https://doi.org/10.1111/1462-2920.16545.-- Data Availability Statement: The catalogue of prokaryotic genes associated with all the B12-related KEGGs used in this study is accessible online in the Zenodo repository: 10.5281/zenodo.7409517. The raw sequences were deposited in the NCBI Sequence Read Archive under accession number PRJEB66489: https://www.ncbi.nlm.nih.gov/sra/PRJEB66489 and PRJEB26919 Vitamin B12 (cobalamin) is a major cofactor required by most marine microbes, but only produced by a few prokaryotes in the ocean, which is globally B12-depleted. Despite the ecological importance of B12, the seasonality of B12 metabolisms and the organisms involved in its synthesis in the ocean remain poorly known. Here we use metagenomics to assess the monthly dynamics of B12-related pathways and the functional diversity of associated microbial communities in the coastal NW Mediterranean Sea over 7 years. We show that genes related to potential B12 metabolisms were characterized by an annual succession of different organisms carrying distinct production pathways. During the most productive winter months, archaea (Nitrosopumilus and Nitrosopelagicus) were the main contributors to B12 synthesis potential through the anaerobic pathway (cbi genes). In turn, Alphaproteobacteria (HIMB11, UBA8309, Puniceispirillum) contributed to B12 synthesis potential in spring and summer through the aerobic pathway (cob genes). Cyanobacteria could produce pseudo-cobalamin from spring to autumn. Finally, we show that during years with environmental perturbations, the organisms usually carrying B12 synthesis genes were replaced by others having the same gene, thus maintaining the potential for B12 production. Such ecological insurance could contribute to the long-term functional resilience of marine microbial communities exposed to contrasting inter-annual environmental conditions Maxime Beauvais was supported by a PhD fellowship from the doctoral school no. 129 of Sorbonne-University With the institutional support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S) Peer reviewed 2023-12-29T10:14:55Z 2023-12-29T10:14:55Z 2023-12 artículo Environmental Microbiology 25(12): 3753-3770 (2023) 1462-2912 CEX2019-000928-S http://hdl.handle.net/10261/341440 10.1111/1462-2920.16545 1462-2920 en Publisher's version https://doi.org/10.1111/1462-2920.16545 Sí open Applied Microbiology International
institution ICM ES
collection DSpace
country España
countrycode ES
component Bibliográfico
access En linea
databasecode dig-icm-es
tag biblioteca
region Europa del Sur
libraryname Biblioteca del ICM España
language English
topic Conserve and sustainably use the oceans, seas and marine resources for sustainable development
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
spellingShingle Conserve and sustainably use the oceans, seas and marine resources for sustainable development
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
Beauvais, Maxime
Schatt, Philippe
Montiel Fontanet, Lidia
Logares, Ramiro
Galand, Pierre E.
Bouget, François-Yves
Functional redundancy of seasonal vitamin B12 biosynthesis pathways in coastal marine microbial communities
description 18 pages, 8 figures, supporting information https://doi.org/10.1111/1462-2920.16545.-- Data Availability Statement: The catalogue of prokaryotic genes associated with all the B12-related KEGGs used in this study is accessible online in the Zenodo repository: 10.5281/zenodo.7409517. The raw sequences were deposited in the NCBI Sequence Read Archive under accession number PRJEB66489: https://www.ncbi.nlm.nih.gov/sra/PRJEB66489 and PRJEB26919
author2 Sorbonne Université
author_facet Sorbonne Université
Beauvais, Maxime
Schatt, Philippe
Montiel Fontanet, Lidia
Logares, Ramiro
Galand, Pierre E.
Bouget, François-Yves
format artículo
topic_facet Conserve and sustainably use the oceans, seas and marine resources for sustainable development
author Beauvais, Maxime
Schatt, Philippe
Montiel Fontanet, Lidia
Logares, Ramiro
Galand, Pierre E.
Bouget, François-Yves
author_sort Beauvais, Maxime
title Functional redundancy of seasonal vitamin B12 biosynthesis pathways in coastal marine microbial communities
title_short Functional redundancy of seasonal vitamin B12 biosynthesis pathways in coastal marine microbial communities
title_full Functional redundancy of seasonal vitamin B12 biosynthesis pathways in coastal marine microbial communities
title_fullStr Functional redundancy of seasonal vitamin B12 biosynthesis pathways in coastal marine microbial communities
title_full_unstemmed Functional redundancy of seasonal vitamin B12 biosynthesis pathways in coastal marine microbial communities
title_sort functional redundancy of seasonal vitamin b12 biosynthesis pathways in coastal marine microbial communities
publisher Applied Microbiology International
publishDate 2023-12
url http://hdl.handle.net/10261/341440
work_keys_str_mv AT beauvaismaxime functionalredundancyofseasonalvitaminb12biosynthesispathwaysincoastalmarinemicrobialcommunities
AT schattphilippe functionalredundancyofseasonalvitaminb12biosynthesispathwaysincoastalmarinemicrobialcommunities
AT montielfontanetlidia functionalredundancyofseasonalvitaminb12biosynthesispathwaysincoastalmarinemicrobialcommunities
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AT galandpierree functionalredundancyofseasonalvitaminb12biosynthesispathwaysincoastalmarinemicrobialcommunities
AT bougetfrancoisyves functionalredundancyofseasonalvitaminb12biosynthesispathwaysincoastalmarinemicrobialcommunities
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