Diversity and distribution of marine heterotrophic bacteria from a large culture collection
16 pages, 5 figures, 3 tables, supplementary information https://doi.org/10.1186/s12866-020-01884-7
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BioMed Central
2020-07
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| Subjects: | Bacterial isolates, Deep ocean, Photic ocean, Diversity, |
| Online Access: | http://hdl.handle.net/10261/216667 http://dx.doi.org/10.13039/501100003329 http://dx.doi.org/10.13039/501100000780 http://dx.doi.org/10.13039/100007406 http://dx.doi.org/10.13039/501100004052 http://dx.doi.org/10.13039/501100011033 |
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dig-icm-es-10261-2166672022-09-23T06:30:52Z Diversity and distribution of marine heterotrophic bacteria from a large culture collection Sanz-Sáez, Isabel Salazar, Guillem Sánchez, Pablo Lara, Elena Royo-Hernández, Lara Sà, Elisabet L. Lucena, Teresa Pujalte, María J. Vaqué, Dolors Duarte, Carlos M. Gasol, Josep M. Pedrós-Alió, Carlos Sánchez, Olga Acinas, Silvia G. European Commission Ministerio de Economía y Competitividad (España) Fundación BBVA Ministerio de Ciencia, Innovación y Universidades (España) King Abdullah University of Science and Technology Agencia Estatal de Investigación (España) Bacterial isolates Deep ocean Photic ocean Diversity 16 pages, 5 figures, 3 tables, supplementary information https://doi.org/10.1186/s12866-020-01884-7 Isolation of marine microorganisms is fundamental to gather information about their physiology, ecology and genomic content. To date, most of the bacterial isolation efforts have focused on the photic ocean leaving the deep ocean less explored. We have created a marine culture collection of heterotrophic bacteria (MARINHET) using a standard marine medium comprising a total of 1561 bacterial strains, and covering a variety of oceanographic regions from different seasons and years, from 2009 to 2015. Specifically, our marine collection contains isolates from both photic (817) and aphotic layers (744), including the mesopelagic (362) and the bathypelagic (382), from the North Western Mediterranean Sea, the North and South Atlantic Ocean, the Indian, the Pacific, and the Arctic Oceans. We described the taxonomy, the phylogenetic diversity and the biogeography of a fraction of the marine culturable microorganisms to enhance our knowledge about which heterotrophic marine isolates are recurrently retrieved across oceans and along different depths Projects Arctic Tipping Points (ATP, contract #226248), in the FP7 program of the European Union, and DOREMI (CTM2012–34294), from the Spanish Ministry of Economy and Competitiveness, allowed the collection of samples from the Arctic and NW Mediterranean Sea, respectively. Research, including laboratory experiments and analyses, was mainly funded by grant BIOSENSOMICS “Convocatoria 2015 de ayudas Fundación BBVA a investigadores y creadores culturales” and, MAGGY, Plan Nacional I + D + I 2017 (CTM2017–87736-R), awarded to S.G.A. Analyses were also possible thank to the King Abdullah University of Science and Technology (KAUST) through baseline funding to C.M.D. and a subaward agreement OSR-2014-CC-1973-02 between KAUST and Universitat Autònoma de Barcelona (UAB). Additional funding for analyses and interpretation of the data was provided by projects REMEI (ref. CTM2015–70340-R) and MIAU-S3 (ref. RTI2018-101025-B-I00) from the Spanish Ministry of Economy and Competitiveness With the funding support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S), of the Spanish Research Agency (AEI) 2020-07-15T09:40:12Z 2020-07-15T09:40:12Z 2020-07 2020-07-15T09:40:13Z artículo http://purl.org/coar/resource_type/c_6501 e-issn: 1471-2180 BMC Microbiology 20: 207 (2020) CEX2019-000928-S http://hdl.handle.net/10261/216667 10.1186/s12866-020-01884-7 http://dx.doi.org/10.13039/501100003329 http://dx.doi.org/10.13039/501100000780 http://dx.doi.org/10.13039/100007406 http://dx.doi.org/10.13039/501100004052 http://dx.doi.org/10.13039/501100011033 32660423 #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/CTM2017-87736-R info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/CTM2015-70340-R info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/RTI2018-101025-B-I00 Publisher's version https://doi.org/10.1186/s12866-020-01884-7 Sí open BioMed Central |
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| topic |
Bacterial isolates Deep ocean Photic ocean Diversity Bacterial isolates Deep ocean Photic ocean Diversity |
| spellingShingle |
Bacterial isolates Deep ocean Photic ocean Diversity Bacterial isolates Deep ocean Photic ocean Diversity Sanz-Sáez, Isabel Salazar, Guillem Sánchez, Pablo Lara, Elena Royo-Hernández, Lara Sà, Elisabet L. Lucena, Teresa Pujalte, María J. Vaqué, Dolors Duarte, Carlos M. Gasol, Josep M. Pedrós-Alió, Carlos Sánchez, Olga Acinas, Silvia G. Diversity and distribution of marine heterotrophic bacteria from a large culture collection |
| description |
16 pages, 5 figures, 3 tables, supplementary information https://doi.org/10.1186/s12866-020-01884-7 |
| author2 |
European Commission |
| author_facet |
European Commission Sanz-Sáez, Isabel Salazar, Guillem Sánchez, Pablo Lara, Elena Royo-Hernández, Lara Sà, Elisabet L. Lucena, Teresa Pujalte, María J. Vaqué, Dolors Duarte, Carlos M. Gasol, Josep M. Pedrós-Alió, Carlos Sánchez, Olga Acinas, Silvia G. |
| format |
artículo |
| topic_facet |
Bacterial isolates Deep ocean Photic ocean Diversity |
| author |
Sanz-Sáez, Isabel Salazar, Guillem Sánchez, Pablo Lara, Elena Royo-Hernández, Lara Sà, Elisabet L. Lucena, Teresa Pujalte, María J. Vaqué, Dolors Duarte, Carlos M. Gasol, Josep M. Pedrós-Alió, Carlos Sánchez, Olga Acinas, Silvia G. |
| author_sort |
Sanz-Sáez, Isabel |
| title |
Diversity and distribution of marine heterotrophic bacteria from a large culture collection |
| title_short |
Diversity and distribution of marine heterotrophic bacteria from a large culture collection |
| title_full |
Diversity and distribution of marine heterotrophic bacteria from a large culture collection |
| title_fullStr |
Diversity and distribution of marine heterotrophic bacteria from a large culture collection |
| title_full_unstemmed |
Diversity and distribution of marine heterotrophic bacteria from a large culture collection |
| title_sort |
diversity and distribution of marine heterotrophic bacteria from a large culture collection |
| publisher |
BioMed Central |
| publishDate |
2020-07 |
| url |
http://hdl.handle.net/10261/216667 http://dx.doi.org/10.13039/501100003329 http://dx.doi.org/10.13039/501100000780 http://dx.doi.org/10.13039/100007406 http://dx.doi.org/10.13039/501100004052 http://dx.doi.org/10.13039/501100011033 |
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