Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
Alberti, Adriana ... et al.-- 20 pages, 6 figures, 2 tables
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Nature Publishing Group
2017-08
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| Online Access: | http://hdl.handle.net/10261/158685 http://dx.doi.org/10.13039/501100001665 http://dx.doi.org/10.13039/501100004794 http://dx.doi.org/10.13039/501100000780 http://dx.doi.org/10.13039/100000001 http://dx.doi.org/10.13039/501100003137 http://dx.doi.org/10.13039/501100001691 http://dx.doi.org/10.13039/501100004837 http://dx.doi.org/10.13039/100013060 http://dx.doi.org/10.13039/100010905 http://dx.doi.org/10.13039/501100011560 http://dx.doi.org/10.13039/501100011697 |
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dig-icm-es-10261-1586852021-12-28T16:38:37Z Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition Alberti, Adriana Ferrera, Isabel Acinas, Silvia G. Royo-Llonch, Marta Cornejo-Castillo, Francisco M. Logares, Ramiro Fernández-Gómez, Beatriz Wincker, Patrick Région Bretagne Lorient Agglomération World Courier Illumina Fondation EDF Fondation pour la Recherche sur la Biodiversité Fondation Prince Albert II de Monaco Tara Foundation Veolia Foundation Ministerio de Ciencia e Innovación (España) National Science Foundation (US) European Commission Agence Nationale de la Recherche (France) European Molecular Biology Laboratory Centre National de la Recherche Scientifique (France) Japan Society for the Promotion of Science Alberti, Adriana ... et al.-- 20 pages, 6 figures, 2 tables A unique collection of oceanic samples was gathered by the Tara Oceans expeditions (2009–2013), targeting plankton organisms ranging from viruses to metazoans, and providing rich environmental context measurements. Thanks to recent advances in the field of genomics, extensive sequencing has been performed for a deep genomic analysis of this huge collection of samples. A strategy based on different approaches, such as metabarcoding, metagenomics, single-cell genomics and metatranscriptomics, has been chosen for analysis of size-fractionated plankton communities. Here, we provide detailed procedures applied for genomic data generation, from nucleic acids extraction to sequence production, and we describe registries of genomics datasets available at the European Nucleotide Archive (ENA, www.ebi.ac.uk/ena). The association of these metadata to the experimental procedures applied for their generation will help the scientific community to access these data and facilitate their analysis. This paper complements other efforts to provide a full description of experiments and open science resources generated from the Tara Oceans project, further extending their value for the study of the world’s planktonic ecosystems We thank the commitment of the following people and sponsors: CNRS (in particular Groupement de Recherche GDR3280), European Molecular Biology Laboratory (EMBL), Genoscope/CEA, the French Government 'Investissements d'Avenir' programmes OCEANOMICS (ANR-11-BTBR-0008) and FRANCE GENOMIQUE (ANR-10-INBS-09-08), Agence Nationale de la Recherche, European Union FP7 (MicroB3/No.287589) and the U.S. National Science Foundation awards DEB-1031049, OCE-0623288, OCE-821374 and OCE-1019242 (to M.E.S. and R.S.) and OCE-1335810 (to R.S.). Additional funding was provided by Spanish Ministry of Science and Innovation grant CGL2011-26848/BOS MicroOcean PANGENOMICS and by Japan Society for the Promotion of Science (JSPS)/KAKENHI (grant numbers 26430184, 16H06429, 16K21723 and 16H06437). We also thank the support and commitment of agnès b. and Etienne Bourgois, the Veolia Environment Foundation, Region Bretagne, Lorient Agglomeration, World Courier, Illumina, the Eléctricité de France (EDF) Foundation, Fondation pour la recherche sur la biodiversité (FRB), the Foundation Prince Albert II de Monaco, the Tara Foundation, its schooner and teams Peer Reviewed 2017-12-29T13:09:52Z 2017-12-29T13:09:52Z 2017-08 2017-12-29T13:09:58Z artículo http://purl.org/coar/resource_type/c_6501 doi: 10.1038/sdata.2017.93 e-issn: 2052-4463 Scientific Data 4: 170093 (2017) http://hdl.handle.net/10261/158685 10.1038/sdata.2017.93 http://dx.doi.org/10.13039/501100001665 http://dx.doi.org/10.13039/501100004794 http://dx.doi.org/10.13039/501100000780 http://dx.doi.org/10.13039/100000001 http://dx.doi.org/10.13039/501100003137 http://dx.doi.org/10.13039/501100001691 http://dx.doi.org/10.13039/501100004837 http://dx.doi.org/10.13039/100013060 http://dx.doi.org/10.13039/100010905 http://dx.doi.org/10.13039/501100011560 http://dx.doi.org/10.13039/501100011697 28763055 Publisher's version https://dx.doi.org/10.1038/sdata.2017.93 Sí open Nature Publishing Group |
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Alberti, Adriana ... et al.-- 20 pages, 6 figures, 2 tables |
| author2 |
Région Bretagne |
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Région Bretagne Alberti, Adriana Ferrera, Isabel Acinas, Silvia G. Royo-Llonch, Marta Cornejo-Castillo, Francisco M. Logares, Ramiro Fernández-Gómez, Beatriz Wincker, Patrick |
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Alberti, Adriana Ferrera, Isabel Acinas, Silvia G. Royo-Llonch, Marta Cornejo-Castillo, Francisco M. Logares, Ramiro Fernández-Gómez, Beatriz Wincker, Patrick |
| spellingShingle |
Alberti, Adriana Ferrera, Isabel Acinas, Silvia G. Royo-Llonch, Marta Cornejo-Castillo, Francisco M. Logares, Ramiro Fernández-Gómez, Beatriz Wincker, Patrick Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition |
| author_sort |
Alberti, Adriana |
| title |
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition |
| title_short |
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition |
| title_full |
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition |
| title_fullStr |
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition |
| title_full_unstemmed |
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition |
| title_sort |
viral to metazoan marine plankton nucleotide sequences from the tara oceans expedition |
| publisher |
Nature Publishing Group |
| publishDate |
2017-08 |
| url |
http://hdl.handle.net/10261/158685 http://dx.doi.org/10.13039/501100001665 http://dx.doi.org/10.13039/501100004794 http://dx.doi.org/10.13039/501100000780 http://dx.doi.org/10.13039/100000001 http://dx.doi.org/10.13039/501100003137 http://dx.doi.org/10.13039/501100001691 http://dx.doi.org/10.13039/501100004837 http://dx.doi.org/10.13039/100013060 http://dx.doi.org/10.13039/100010905 http://dx.doi.org/10.13039/501100011560 http://dx.doi.org/10.13039/501100011697 |
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